GEO series
Oxidative stress and GPX2 control pancreatic vs non-pancreatic cell fate in human endoderm
GSE291135
Homo sapiens
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
20 samples
2025/12/02
GPL34281
Summary
The role of oxidative stress in cell fate decisions during human endoderm development remains poorly understood. Here, we show that GPX2, a key enzyme in the reactive oxygen species (ROS) scavenging pathway, plays a crucial role in directing pancreatic versus non-pancreatic cell fate decisions during in vitro human endoderm differentiation. Using hPSCs with GPX2 loss-of- or gain-of-function, we observed that GPX2-deficient cells exhibit a strong propensity to differentiate into liver-like cells, even under pancreatic-promoting conditions. Single-cell RNA sequencing, ATAC sequencing, and follow-up analyses revealed that GPX2 deficiency disrupts posterior foregut patterning, leading to the emergence of multilineage progenitors capable of generating liver- and intestine-like lineages. Phenotype rescue experiments demonstrated that manipulating oxidative stress levels by either inhibiting or promoting ROS production could mimic or revert the effects of GPX2 deficiency, respectively. Our findings highlight the critical role of oxidative stress in modulating developmental trajectories and suggest that GPX2 acts as a gatekeeper of pancreatic cell fate by influencing the expression of PDX1 and other lineage-specifying factors.
Download
NCBI GEO page ↗
Paper (PMID 41484137) ↗
{# Names what the click gives you. "Open in finder" meant nothing to a
visitor who arrived from a search engine and has never seen the tool. #}
Find more
human RNA-seq datasets →
Similar datasets
- GSE300595 Multiomic sequencing identifies myeloid cell associations with neoadjuvant chemotherapy treatment response in pancreatic adenocarcinoma (PDAC) 24 samples
- GSE335464 Integrative single-cell multi-omics profiling of human pancreatic islets identifies T1D-associated genes and regulatory signals [single cell] 28 samples
- GSE307120 Fusion-driven oncogenic programs shape the immune landscape in translocation renal cell carcinoma 21 samples
- GSE263717 Epigenomic profiles of SLE resting and transitional B cells 150 samples
- GSE233321 Single-cell map of the healthy human immune system across the lifespan reveals unique infant immune signatures 118 samples
- GSE283005 Distinct differentiation trajectories leave lasting impacts on gene regulation and function of V2a neurons 60 samples
- GSE342612 Transcriptomic and H3K27ac chromatin responses of human microglia to acute PFOS exposure and recovery 36 samples
- GSE241581 DCAF15 control of cohesin dynamics sustains acute myeloid leukemia 36 samples
Share this dataset
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.