Type 2 cytokines act on enteric sensory neurons to regulate neuropeptide-driven host defense [RNA-Seq]
RNA-seq (gene expression) · mouse · 18 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 18 samples: 18 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Type 2 cytokines act on enteric sensory neurons to regulate neuropeptide-driven host defenseScience (New York, N.Y.) · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE292633_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1240348 and SRA study SRP572275. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 18 sample titles: 18 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8862605 Ileal lamina propria ILC2s; Control; replicate 1; H. polygyrus (7 d.p.i.)
- GSM8862606 Ileal lamina propria ILC2s; Control; replicate 2; H. polygyrus (7 d.p.i.)
- GSM8862607 Ileal lamina propria ILC2s; Control; replicate 3; H. polygyrus (7 d.p.i.)
- GSM8862608 Ileal lamina propria ILC2s; Control; replicate 4; H. polygyrus (7 d.p.i.)
- GSM8862609 Ileal lamina propria ILC2s; Control; replicate 5; H. polygyrus (7 d.p.i.)
- GSM8862610 Ileal lamina propria ILC2s; cKO; replicate 1; H. polygyrus (7 d.p.i.)
- GSM8862611 Ileal lamina propria ILC2s; cKO; replicate 2; H. polygyrus (7 d.p.i.)
- GSM8862612 Ileal lamina propria ILC2s; cKO; replicate 3; H. polygyrus (7 d.p.i.)
- GSM8862613 Ileal lamina propria ILC2s; cKO; replicate 4; H. polygyrus (7 d.p.i.)
- GSM8862614 Ileal muscularis ILC2s; Control; replicate 1; H. polygyrus (7 d.p.i.)
- GSM8862615 Ileal muscularis ILC2s; Control; replicate 2; H. polygyrus (7 d.p.i.)
- GSM8862616 Ileal muscularis ILC2s; Control; replicate 3; H. polygyrus (7 d.p.i.)
- GSM8862617 Ileal muscularis ILC2s; Control; replicate 4; H. polygyrus (7 d.p.i.)
- GSM8862618 Ileal muscularis ILC2s; Control; replicate 5; H. polygyrus (7 d.p.i.)
- GSM8862619 Ileal muscularis ILC2s; cKO; replicate 1; H. polygyrus (7 d.p.i.)
- GSM8862620 Ileal muscularis ILC2s; cKO; replicate 2; H. polygyrus (7 d.p.i.)
- GSM8862621 Ileal muscularis ILC2s; cKO; replicate 3; H. polygyrus (7 d.p.i.)
- GSM8862622 Ileal muscularis ILC2s; cKO; replicate 4; H. polygyrus (7 d.p.i.)
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.