Major waves of H2A.Z incorporation during mouse oogenesis and preimplantation embryo development
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 36 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 36 samples: 36 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Major waves of H2A.Z incorporation during mouse oogenesis and preimplantation embryo developmentNature communications · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE293415_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1244397 and SRA study SRP575476. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 36 sample titles: 36 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8881825 P12 H2AZ Replicate A
- GSM8881826 Morula H2AZ Replicate A
- GSM8881827 Blastocyst H2AZ Replicate A
- GSM8881828 P12 Input Replicate A
- GSM8881829 NSN Input Replicate A
- GSM8881830 SN Input Replicate A
- GSM8881831 MII Input Replicate A
- GSM8881832 8-cell Input Replicate A
- GSM8881833 Morula Input Replicate A
- GSM8881834 Blastocyst Input Replicate A
- GSM8881835 NSN H2AZ Replicate A
- GSM8881836 SN H2AZ Replicate A
- GSM8881837 MII H2AZ Replicate A
- GSM8881838 8-cell H2AZ Replicate A
- GSM8881839 P10 H2AZ Replicate A
- GSM8881840 P10 Input Replicate A
- GSM8881841 P10 Input Replicate B
- GSM8881842 P7 Input Replicate A
- GSM8881843 P12 Input Replicate B
- GSM8881844 P10 H2AZ Replicate B
- GSM8881845 P7 H2AZ Replicate A
- GSM8881846 Downscaling 100k ES cells H2AZ
- GSM8881847 Downscaling 10k ES cells H2AZ
- GSM8881848 Downscaling 500 ES cells H2AZ
- GSM8881849 Downscaling ES cells Input
- GSM8881850 Downscaling 1k ES cells H2AZ
- GSM9214788 P10 H2AZ Replicate C
- GSM9214789 4-cell Input Replicate A
- GSM9214790 P10 H2AZ Replicate D
- GSM9214791 Zygote H2AZ Replicate A
- GSM9214792 2-cell H2AZ Replicate A
- GSM9214793 4-cell H2AZ Replicate A
- GSM9214794 P10 Input Replicate C
- GSM9214795 P10 Input Replicate D
- GSM9214796 Zygote Input Replicate A
- GSM9214797 2-cell Input Replicate A
- GSE241193 P300 Regulates Histone Crotonylation and Preimplantation Embryo Development (ChIP-Seq) 22 samples shares preimplantation, embryo
- GSE282209 Single-nucleus chromatin accessibility landscape in mouse preimplantation embryos 12 samples shares preimplantation, embryo
- GSE272793 An atlas of small non-coding RNAs in Human Preimplantation Development (Mouse embryo RNA-seq) 132 samples shares preimplantation, embryo
- GSE262791 LaminB1 DamID, RNA-seq and Genome-wide analysis of replication timing in RIF1 depleted preimplantation mouse embryos 468 samples shares preimplantation, embryo
- GSE263902 The translational landscape of mouse oocytes and preimplantation embryos revealed by high-resolution ribosome profiling 272 samples shares preimplantation, embryo
- GSE284010 Novel Single-Cell Multiomics Approach to Analyze Replication Timing and Gene Expression in Mouse Preimplantation Embryos 248 samples shares preimplantation, embryo
- GSE281829 A sperm-enriched 5’fragment of tRNA-Valine regulates preimplantation embryonic transcriptome and development 32 samples shares preimplantation, embryo
- GSE241404 Paternal under and over nutrition modify semen composition and preimplantation embryo developmental kinetics in mice 25 samples shares preimplantation, embryo
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.