Essential role of NONO-HOXA1-Wnt axis in cardiomyocyte differentiation [ChIP-seq]
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 15 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 15 samples: 5 conditions, mostly in duplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Essential role of NONO-HOXA1-Wnt axis in cardiomyocyte differentiationNature communications · 2026
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE295270_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1253979 and SRA study SRP580398. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 10 samples.
How we read this: 5 replicated groups read from 15 sample titles; they account for 10 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8944582 NONO_ChIP_in_WT_Day2_rep1 NONO_ChIP_in_WT_Day2
- GSM8944583 NONO_ChIP_in_WT_Day2_rep2 NONO_ChIP_in_WT_Day2
- GSM8944584 HOXA1-HA_ChIP_in_WT_Day2_rep1 HOXA1-HA_ChIP_in_WT_Day2
- GSM8944585 HOXA1-HA_ChIP_in_WT_Day2_rep2 HOXA1-HA_ChIP_in_WT_Day2
- GSM8944586 HOXA1-HA_ChIP_in_NONO-KO_Day2_rep1 HOXA1-HA_ChIP_in_NONO-K…
- GSM8944587 HOXA1-HA_ChIP_in_NONO-KO_Day2_rep2 HOXA1-HA_ChIP_in_NONO-K…
- GSM8944588 Input_in_WT_Day2_rep1 Input_in_WT_Day2
- GSM8944589 Input_in_WT_Day2_rep2 Input_in_WT_Day2
- GSM8944590 Input_in_NONO-KO_Day2_rep1 Input_in_NONO-KO_Day2
- GSM8944591 Input_in_NONO-KO_Day2_rep2 Input_in_NONO-KO_Day2
- GSM9409166 H3K27AC_in_WT_Day2
- GSM9409167 First ChIP_in_WT_Day2 overexpressing HOXA1-HA
- GSM9409168 ReChIP_in_WT_Day2 overexpressing HOXA1-HA
- GSM9409169 Input_in_WT_Day2
- GSM9409170 ATAC_in_WT_Day2
- GSE212437 EZH2 reads DNA 6mA to regulate survival and drug resistance of human head and neck squamous carcinoma by suppressing RIOX2-CDKN1A-NRF2 signaling axis [MeDIP-ChIP-seq-shRNA] 17 samples shares chip-seq, axis
- GSE328191 Multiomic profiling of vascular endothelial cell differentiation from human embryonic stem cells [ChIP-seq] 80 samples shares chip-seq
- GSE280574 mChIP-seq for high-throughput epigenomic profiling reveals a decoupling of H2A.Z and H3K4me3 in cancer 576 samples shares chip-seq
- GSE271752 Macromolecular interactions dictate Polycomb-mediated epigenetic repression [ChIP-seq] 194 samples shares chip-seq
- GSE277608 Characterization of induced cohesin loop extrusion trajectories in living cells [ChIP-seq] 147 samples shares chip-seq
- GSE289805 Histone H4 lysine 20 tri-methylation safeguards breast cancer lineage fidelity and unfolded protein response [ChIP-seq/ATAC-seq] 126 samples shares chip-seq
- GSE297914 PU.1-Activated Genomic Regions Define Low-risk MDS Subsets Characterized by Immune Dysregulation and Disease Progression [ChIP-seq] 112 samples shares chip-seq
- GSE239270 Investigate FOXA2, NKX2-1, CTCF and P300 cistrome and enhancer (H3K27ac and H3k4me1) reprogramming during NEPC transformation by ChIP-seq. 104 samples shares chip-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.