CD47 Expression in Solid Tumors Correlates with Phagocytic Tumor-Associated Macrophage Gene Signature
RNA-seq (gene expression) · human · 109 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 109 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- CD47 expression in solid tumors correlates with phagocytic tumor-associated macrophage gene signatureFrontiers in immunology · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE296861_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1261839 and SRA study SRP584672. Searching any of these in the dataset finder brings you back here.
The grouping that defines any comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Sample titles run Hu-P-3655 … Hu-P-5088 and carry no group information.
- GSM8978697 Hu-P-3655
- GSM8978698 Hu-P-3656
- GSM8978699 Hu-P-3657
- GSM8978700 Hu-P-3658
- GSM8978701 Hu-P-3660
- GSM8978702 Hu-P-3661
- GSM8978703 Hu-P-3662
- GSM8978704 Hu-P-3663
- GSM8978705 Hu-P-3664
- GSM8978706 Hu-P-3665
- GSM8978707 Hu-P-3666
- GSM8978708 Hu-P-3814
- GSM8978709 Hu-P-3815
- GSM8978710 Hu-P-3816
- GSM8978711 Hu-P-3817
- GSM8978712 Hu-P-3819
- GSM8978713 Hu-P-3820
- GSM8978714 Hu-P-3821
- GSM8978715 Hu-P-3826
- GSM8978716 Hu-P-3827
- GSM8978717 Hu-P-3828
- GSM8978718 Hu-P-3829
- GSM8978719 Hu-P-3831
- GSM8978720 Hu-P-3833
- GSM8978721 Hu-P-3834
- GSM8978722 Hu-P-3835
- GSM8978723 Hu-P-3837
- GSM8978724 Hu-P-3838
- GSM8978725 Hu-P-3839
- GSM8978726 Hu-P-3840
- GSM8978727 Hu-P-3841
- GSM8978728 Hu-P-3842
- GSM8978729 Hu-P-2136
- GSM8978730 Hu-P-2137
- GSM8978731 Hu-P-2138
- GSM8978732 Hu-P-2139
- GSM8978733 Hu-P-1090
- GSM8978734 Hu-P-1097
- GSM8978735 Hu-P-1099
- GSM8978736 Hu-P-1101
+ 69 more — browse all 109 samples with per-sample file links →
- GSE202174 Single-cell RNA-sequencing reveals enrichment of different macrophage subsets following radiation or anti-CD47 therapy in Diffuse Midline Glioma and Glioblastoma 9 samples shares cd47, macrophage
- GSE319722 Spatial dynamics links PD-L1 and Tumor-Associated Macrophage–Enriched Niches to Immune and Mesenchymal States in microsatellite stable colorectal cancer 117 samples shares tumor-associated, macrophage
- GSE288623 Transcriptional profiles of the Hodgkin lymphoma tumor-associated macrophage in vitro models 24 samples shares tumor-associated, macrophage
- GSE296472 Xenoline-polarized macrophages as a physiologically relevant in vitro model of tumor-associated macrophages in glioblastoma 20 samples shares tumor-associated, macrophage
- GSE282239 A new soluble CSF1R-dimeric mutein with enhanced trapping of both CSF-1 and IL-34 reduces suppressive tumor-associated macrophages in mesothelioma. 12 samples shares tumor-associated, macrophage
- GSE283259 Effect of IL-8 and VEGFA on polarization of tumor-associated macrophages 12 samples shares tumor-associated, macrophage
- GSE302643 Tumor-associated macrophages (TAMs) with or without HRS knockdown (KD) 9 samples shares tumor-associated, macrophage
- GSE301110 Complex interaction of tumor-derived factors instructs the niche specific phenotypes of tumor-associated macrophages (in vitro human macrophage RNA-Seq) 9 samples shares tumor-associated, macrophage
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.