Novel Epigenetic Mechanisms of Endogenous CSE/H₂S in Smooth Muscle Cells for Abdominal Aortic Aneurysm [ChIP-Seq]
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 36 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 36 samples: 36 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE296864_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1261837 and SRA study SRP584727. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 36 sample titles: 36 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8978824 WT, Ang II-1 (H3k9me3 Input)
- GSM8978825 WT, Ang II-2 (H3k9me3 Input)
- GSM8978826 WT, Ang II-3 (H3k9me3 Input)
- GSM8978827 WT, Ang II-1 (H3k9me3 ChIP)
- GSM8978828 WT, Ang II-2 (H3k9me3 ChIP)
- GSM8978829 WT, Ang II-3 (H3k9me3 ChIP)
- GSM8978830 KO, Ang II-1 (H3k9me3 Input)
- GSM8978831 KO, Ang II-2 (H3k9me3 Input)
- GSM8978832 KO, Ang II-3 (H3k9me3 Input)
- GSM8978833 KO, Ang II-1 (H3k9me3 ChIP)
- GSM8978834 KO, Ang II-2 (H3k9me3 ChIP)
- GSM8978835 KO, Ang II-3 (H3k9me3 ChIP)
- GSM8978836 WT, Ang II-1 (H3k9ac Input)
- GSM8978837 WT, Ang II-2 (H3k9ac Input)
- GSM8978838 WT, Ang II-3 (H3k9ac Input)
- GSM8978839 WT, Ang II-1 (H3k9ac ChIP)
- GSM8978840 WT, Ang II-2 (H3k9ac ChIP)
- GSM8978841 WT, Ang II-3 (H3k9ac ChIP)
- GSM8978842 KO, Ang II-1 (H3k9ac Input)
- GSM8978843 KO, Ang II-2 (H3k9ac Input)
- GSM8978844 KO, Ang II-3 (H3k9ac Input)
- GSM8978845 KO, Ang II-1 (H3k9ac ChIP)
- GSM8978846 KO, Ang II-2 (H3k9ac ChIP)
- GSM8978847 KO, Ang II-3 (H3k9ac ChIP)
- GSM8978848 WT, Ang II-1 (H3k4me3 Input)
- GSM8978849 WT, Ang II-2 (H3k4me3 Input)
- GSM8978850 WT, Ang II-3 (H3k4me3 Input)
- GSM8978851 WT, Ang II-1 (H3k4me3 ChIP)
- GSM8978852 WT, Ang II-2 (H3k4me3 ChIP)
- GSM8978853 WT, Ang II-3 (H3k4me3 ChIP)
- GSM8978854 KO, Ang II-1 (H3k4me3 Input)
- GSM8978855 KO, Ang II-2 (H3k4me3 Input)
- GSM8978856 KO, Ang II-3 (H3k4me3 Input)
- GSM8978857 KO, Ang II-1 (H3k4me3 ChIP)
- GSM8978858 KO, Ang II-2 (H3k4me3 ChIP)
- GSM8978859 KO, Ang II-3 (H3k4me3 ChIP)
- GSE261595 The spatiotemporal expression profile of ATF3 determines the fate of smooth muscle cells in abdominal aortic aneurysm development 10 samples shares abdominal, aneurysm, smooth, muscle
- GSE289642 Noncanonical PRC2 chromatin association reveals a key role of EZHIP in intergenerational epigenetic memory transition [ChIP-Seq, Cut & Run] 107 samples shares epigenetic, chip-seq
- GSE289108 Neurons undergo IFNγ-driven persistent epigenetic shifts and synaptic remodeling in the inflamed brain [ChIP-Seq] 57 samples shares epigenetic, chip-seq
- GSE275917 Nup153 regulates neuronal responsiveness through HDAC1-mediated epigenetic modulation [ChIP-seq] 17 samples shares epigenetic, chip-seq
- GSE299381 KAT6A Chimeras Forms a Self-Reinforcing Epigenetic Module with NURF and MLL/COMPASS in AML [ChIP-Seq] 13 samples shares epigenetic, chip-seq
- GSE226578 Stem Cell Activity-Coupled Suppression of Endogenous Retrovirus Governs Adult Tissue Regeneration [ChIP-seq/hMeDIP] 25 samples shares endogenous, chip-seq
- GSE226867 Estrogen Effects on Abdominal Skeletal Muscle Fibroblasts in Inguinal Hernia Mouse Model [RNA-Seq] 12 samples shares abdominal, muscle
- GSE262842 Antitumor progenitor exhausted CD8 T cells are sustained with TCR engagement [ATACseq] 24 samples shares cse
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.