GEO series
Bulk RNA-seq of primary tumor biopsy samples from prostate adenocarcinoma patients
GSE297742
Homo sapiens (human)
Single-cell RNA-seq
234 samples
Submitted 2025/11/19
Platform GPL24676
At a glance
Single-cell RNA-seq · human · 234 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart. Read from the summary: GEO's own type field only says 'expression profiling by sequencing', so confirm it in the paper.
- Organism
- Homo sapiens (human)
- Topic
- Prostate cancerThis series is part of our curated briefing on it.
- Samples
- 234 samples: 234 × Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YSGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- CD45⁺ hybrid circulating cells may reflect tumor-immune interactions and serve as transcriptomic indicators of metastatic potential in prostate cancerTheranostics · 2026
Summary (written by the submitters)
This dataset contains bulk RNA sequencing data from primary tumor biopsy samples of patients with prostate adenocarcinoma. TPM-normalized expression values are provided along with sample metadata. The data were generated to support transcriptomic profiling of human prostate tumors and are related to a companion single-cell RNA-seq dataset from the same cohort.
Published in
Kim BG, Jang Y, Kim MG et al.
· Theranostics 2026
· PMID 41355965
· doi:10.7150/thno.122226
This dataset
Download · which file do I need?
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
1 · Just have a look
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
2 · Re-analyse it
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE297742_RAW.tar (it can run to tens of gigabytes).
3 · Start from the raw reads
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA1266079. Searching any of these in the dataset finder brings you back here.
Study design
234 × Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS
Supports a between-group comparison across 234 samples.
How we read this: 1 replicated groups read from 234 sample titles; they account for 234 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
Samples in this study
- GSM8997974 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040085 Bulk RNA-seq of prostat…
- GSM8997975 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040086 Bulk RNA-seq of prostat…
- GSM8997976 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040087 Bulk RNA-seq of prostat…
- GSM8997977 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040088 Bulk RNA-seq of prostat…
- GSM8997978 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040089 Bulk RNA-seq of prostat…
- GSM8997979 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040090 Bulk RNA-seq of prostat…
- GSM8997980 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040091 Bulk RNA-seq of prostat…
- GSM8997981 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040092 Bulk RNA-seq of prostat…
- GSM8997982 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040093 Bulk RNA-seq of prostat…
- GSM8997983 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040094 Bulk RNA-seq of prostat…
- GSM8997984 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040095 Bulk RNA-seq of prostat…
- GSM8997985 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040096 Bulk RNA-seq of prostat…
- GSM8997986 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040097 Bulk RNA-seq of prostat…
- GSM8997987 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040098 Bulk RNA-seq of prostat…
- GSM8997988 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040099 Bulk RNA-seq of prostat…
- GSM8997989 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040100 Bulk RNA-seq of prostat…
- GSM8997990 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040101 Bulk RNA-seq of prostat…
- GSM8997991 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040102 Bulk RNA-seq of prostat…
- GSM8997992 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040103 Bulk RNA-seq of prostat…
- GSM8997993 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040104 Bulk RNA-seq of prostat…
- GSM8997994 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040105 Bulk RNA-seq of prostat…
- GSM8997995 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040106 Bulk RNA-seq of prostat…
- GSM8997996 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040107 Bulk RNA-seq of prostat…
- GSM8997997 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040108 Bulk RNA-seq of prostat…
- GSM8997998 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040109 Bulk RNA-seq of prostat…
- GSM8997999 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040110 Bulk RNA-seq of prostat…
- GSM8998000 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040111 Bulk RNA-seq of prostat…
- GSM8998001 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040112 Bulk RNA-seq of prostat…
- GSM8998002 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040113 Bulk RNA-seq of prostat…
- GSM8998003 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040114 Bulk RNA-seq of prostat…
- GSM8998004 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040115 Bulk RNA-seq of prostat…
- GSM8998005 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040116 Bulk RNA-seq of prostat…
- GSM8998006 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040117 Bulk RNA-seq of prostat…
- GSM8998007 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040118 Bulk RNA-seq of prostat…
- GSM8998008 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040119 Bulk RNA-seq of prostat…
- GSM8998009 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040120 Bulk RNA-seq of prostat…
- GSM8998010 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040121 Bulk RNA-seq of prostat…
- GSM8998011 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040122 Bulk RNA-seq of prostat…
- GSM8998012 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040123 Bulk RNA-seq of prostat…
- GSM8998013 Bulk RNA-seq of prostate adenocarcinoma biopsy sample OP24YS040124 Bulk RNA-seq of prostat…
+ 194 more — browse all 234 samples with per-sample file links →
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Share this dataset
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.