Fluvastatin protects Leydig cells in orchitis through direct activation of Peroxiredoxin 1
RNA-seq (gene expression) · mouse · 18 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 18 samples: 6 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE298181_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1268478 and SRA study SRP588083. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 18 samples.
How we read this: 6 replicated groups read from 18 sample titles; they account for 18 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9009590 Mus musculus, Leydig cells, siNC, biol repl1 Mus musculus, Leydig ce…
- GSM9009591 Mus musculus, Leydig cells, siNC, biol repl2 Mus musculus, Leydig ce…
- GSM9009592 Mus musculus, Leydig cells, siNC, biol repl3 Mus musculus, Leydig ce…
- GSM9009593 Mus musculus, Leydig cells, siNC+H2O2, biol repl1 Mus musculus, Leydig ce…
- GSM9009594 Mus musculus, Leydig cells, siNC+H2O2, biol repl2 Mus musculus, Leydig ce…
- GSM9009595 Mus musculus, Leydig cells, siNC+H2O2, biol repl3 Mus musculus, Leydig ce…
- GSM9009596 Mus musculus, Leydig cells, siNC+H2O2+FV, biol repl1 Mus musculus, Leydig ce…
- GSM9009597 Mus musculus, Leydig cells, siNC+H2O2+FV, biol repl2 Mus musculus, Leydig ce…
- GSM9009598 Mus musculus, Leydig cells, siNC+H2O2+FV, biol repl3 Mus musculus, Leydig ce…
- GSM9009599 Mus musculus, Leydig cells, siprdx1, biol repl1 Mus musculus, Leydig ce…
- GSM9009600 Mus musculus, Leydig cells, siprdx1, biol repl2 Mus musculus, Leydig ce…
- GSM9009601 Mus musculus, Leydig cells, siprdx1, biol repl3 Mus musculus, Leydig ce…
- GSM9009602 Mus musculus, Leydig cells, siprdx1+H2O2, biol repl1 Mus musculus, Leydig ce…
- GSM9009603 Mus musculus, Leydig cells, siprdx1+H2O2, biol repl2 Mus musculus, Leydig ce…
- GSM9009604 Mus musculus, Leydig cells, siprdx1+H2O2, biol repl3 Mus musculus, Leydig ce…
- GSM9009605 Mus musculus, Leydig cells, siprdx1+H2O2+FV, biol repl1 Mus musculus, Leydig ce…
- GSM9009606 Mus musculus, Leydig cells, siprdx1+H2O2+FV, biol repl2 Mus musculus, Leydig ce…
- GSM9009607 Mus musculus, Leydig cells, siprdx1+H2O2+FV, biol repl3 Mus musculus, Leydig ce…
- GSE255212 Transcriptomic Signatures of WNT-Driven Pathways and Granulosa Cell-Oocyte Interaction during Primordial Follicle Activation 762 samples shares activation
- GSE331176 Phagosome-mediated activation of STING by purine and pyrimidine-based bacterial cyclic dinucleotides 380 samples shares activation
- GSE247323 Maternal indole supplementation protects offspring from NAFLD through altered microbiota- and AHR-mediated ceramide metabolism 40 samples shares protects
- GSE319612 Rothia mucilaginosa Alleviates Constipation through Gut Microbiota Remodeling and Neuroactive Pathway Activation 26 samples shares activation
- GSE99296 α-ketoglutarate orchestrates macrophage activation through metabolic and epigenetic reprogramming 18 samples shares activation
- GSE243942 Spatio-temporal X-linked gene reactivation in the mouse germline reveals site-specific retention of epigenetic silencing [RNA-seq] 125 samples shares activation
- GSE297515 Piezo1-dependent activation of stromal cells ignites muscle inflammation in exercise and injury and is associated with inflammaging 90 samples shares activation
- GSE236129 Activation of RAS/MEK/ERK signaling drives biliary differentiation in primary liver cancer [112UE] 80 samples shares activation
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.