Inhibition of S1PR4 and supplementation of APOM in Alport Podocytes
RNA-seq (gene expression) · mouse · 15 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 15 samples: 6 × IMAS vs 3 × APOM vs 3 × CYM vs 3 × IMWTGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE300237_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1279954 and SRA study SRP593560. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 15 samples.
How we read this: 4 replicated groups read from 15 sample titles; they account for 15 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9056162 IMAS 1 IMAS
- GSM9056163 IMAS 2 IMAS
- GSM9056164 IMAS 3 IMAS
- GSM9056165 APOM 1 APOM
- GSM9056166 APOM 2 APOM
- GSM9056167 APOM 3 APOM
- GSM9056168 CYM 1 CYM
- GSM9056169 CYM 2 CYM
- GSM9056170 CYM 3 CYM
- GSM9429244 IMWT_1 IMWT
- GSM9429245 IMWT_2 IMWT
- GSM9429246 IMWT_3 IMWT
- GSM9429247 IMAS_1 IMAS
- GSM9429248 IMAS_2 IMAS
- GSM9429249 IMAS_3 IMAS
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.