Transcriptional differences in jejunum and ileum of a conditional knockout of Dab2 in the intestine
RNA-seq (gene expression) · mouse · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples: 12 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- The mouse neonatal small intestine is regionally specialized for protein absorption and transepithelial transportDevelopment (Cambridge, England) · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE301313_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1284789 and SRA study SRP596428. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 12 sample titles: 12 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9080874 P6_cKO_M_Ileum_L41662-7
- GSM9080875 P6_cKO_M_Ileum_L41820-3
- GSM9080876 P6_cKO_M_Ileum_L41830-2
- GSM9080877 P6_cKO_M_Jejunum_L41662-7
- GSM9080878 P6_cKO_M_Jejunum_L41820-3
- GSM9080879 P6_cKO_M_Jejunum_L41830-2
- GSM9080880 P6_cWT_M_Ileum_L41662-1
- GSM9080881 P6_cWT_M_Ileum_L41820-1
- GSM9080882 P6_cWT_M_Ileum_L41830-8
- GSM9080883 P6_cWT_M_Jejunum_L41662-1
- GSM9080884 P6_cWT_M_Jejunum_L41820-1
- GSM9080885 P6_cWT_M_Jejunum_L41830-8
- GSE229815 Transcriptional profiling of 12 month striatum and cortex from a mouse model of Huntington's disease (Q140) crossed with Msh2 heterozygous or homozygous conditional knockout mice [Msh2_12mon] 138 samples shares conditional, knockout
- GSE229817 Transcriptional profiling of 6 month striatum and cortex from a mouse model of Huntington's disease (Q140) crossed with Msh2 conditional knockout mice [Msh2_6mon] 64 samples shares conditional, knockout
- GSE279318 DYRK1A Inhibition via Harmine or via Conditional Knockout 28 samples shares conditional, knockout
- GSE205029 Single Cell Sequencing Data of Mouse Spinal Cord with Dorsal Column Lesion and Astrocyte-Specific Ryk conditional Knockout 16 samples shares conditional, knockout
- GSE303929 Comparative Transcriptomic Analysis of Embryonic Hearts in Atf4 Exon 2 and Exon 2–3 Conditional Knockout Mice 16 samples shares conditional, knockout
- GSE235593 Impact of Conditional Knockout of Complement C3 and Sphingosine-1-Phosphate Receptor 1 (S1PR1) on Lung Metastasis in MMTV-PyMT Mice 12 samples shares conditional, knockout
- GSE329565 Gene expression profiling by RNA-Seq analysis of mice carrying an inner-ear conditional knockout of Esrrg. 10 samples shares conditional, knockout
- GSE232844 Effect of conditional triple-knockout of Jmjd2a/Kdm4a, Jmjd2b/Kdm4b and Jmjd2c/Kdm4c or overexpression of KDM4C/JMJD2C mutants with different phase separation ability on gene expression in mouse embryonic stem cells. [RNA-Seq] 10 samples shares conditional, knockout
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.