Prediction and Characterization of Genetically-Regulated Expression of Asthma Tissues from African-Ancestry Populations
RNA-seq (gene expression) · human · 260 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 260 samples: 260 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Prediction and characterization of genetically regulated expression of asthma tissues from African-ancestry populationsThe Journal of allergy and clinical immunology · 2026
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE301390_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1270980 and SRA study SRP589269. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 260 sample titles: 260 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9081966 15114002, CD4+ T cells, asthma case
- GSM9081967 15133005, CD4+ T cells, asthma case
- GSM9081968 15134003, CD4+ T cells, asthma case
- GSM9081969 15105001, CD4+ T cells, asthma case
- GSM9081970 15550001, CD4+ T cells, asthma case
- GSM9081971 15189001, CD4+ T cells, asthma case
- GSM9081972 15195001, CD4+ T cells, asthma case
- GSM9081973 15254001, CD4+ T cells, asthma case
- GSM9081974 15198002, CD4+ T cells, asthma case
- GSM9081975 15549001, CD4+ T cells, asthma case
- GSM9081976 15185002, CD4+ T cells, asthma case
- GSM9081977 15160002, CD4+ T cells, asthma case
- GSM9081978 15139050, CD4+ T cells, control
- GSM9081979 15297050, CD4+ T cells, control
- GSM9081980 15306002, CD4+ T cells, control
- GSM9081981 15188001, CD4+ T cells, asthma case
- GSM9081982 15431003, CD4+ T cells, asthma case
- GSM9081983 15170001, CD4+ T cells, asthma case
- GSM9081984 15142002, CD4+ T cells, asthma case
- GSM9081985 15133004, CD4+ T cells, control
- GSM9081986 15003006, CD4+ T cells, control
- GSM9081987 15313002, CD4+ T cells, control
- GSM9081988 15332001, CD4+ T cells, asthma case
- GSM9081989 15258002, CD4+ T cells, control
- GSM9081990 15044013, CD4+ T cells, control
- GSM9081991 15120005, CD4+ T cells, asthma case
- GSM9081992 15494001, CD4+ T cells, asthma case
- GSM9081993 15483001, CD4+ T cells, asthma case
- GSM9081994 15254003, CD4+ T cells, asthma case
- GSM9081995 15515001, CD4+ T cells, asthma case
- GSM9081996 15463001, CD4+ T cells, asthma case
- GSM9081997 15476001, CD4+ T cells, asthma case
- GSM9081998 15490001, CD4+ T cells, asthma case
- GSM9081999 15462001, CD4+ T cells, asthma case
- GSM9082000 15429001, CD4+ T cells, asthma case
- GSM9082001 15452001, CD4+ T cells, control
- GSM9082002 15433001, CD4+ T cells, asthma case
- GSM9082003 15459001, CD4+ T cells, asthma case
- GSM9082004 15145002, CD4+ T cells, asthma case
- GSM9082005 15422001, CD4+ T cells, asthma case
+ 220 more — browse all 260 samples with per-sample file links →
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.