scRNA-seq of primary mouse and human cerebellar nestin-expressing progenitor neurosphere cultures
Single-cell RNA-seq · human · 1 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart.
- Organism
- Homo sapiens (human)
- Samples
- 1 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- A conserved differentiation programme facilitates inhibitory neuron production in the developing mouse and human cerebellumDevelopment (Cambridge, England) · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE301654_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA1285923 and SRA study SRP598139. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 1 more — browse all 1 samples with per-sample file links →
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- GSE232586 Compared with the Mock group, FGF8+10 treatment mature the differentiated LPM-like cells to form LM-like cells, and gene expression profile at single cell level of Msx1+ mesenchymal progenitors from mouse E10.5 embryos 9 samples shares progenitor
- GSE217571 Effect of ZIC1 on group 3 medulloblastoma cell lines and granule neuron progenitor [RNA-seq] 36 samples shares progenitor
- GSE312133 Intrinsic mechanisms and microenvironmental cues fine-tune plasticity of esophageal progenitors 26 samples shares progenitor
- GSE294342 ALDH1A1+ cells are endometrial progenitors contributing to regeneration and endometriosis 20 samples shares progenitor
- GSE326194 Distinct signalling centre and progenitor identity dynamics initiate human forebrain patterning 16 samples shares progenitor
- GSE244521 Assessment of myogenic maturation for human iPSC-derived iPAX7 myogenic progenitors in vitro and in vivo 14 samples shares progenitor
- GSE296783 Transcriptional changes and epigenetic landscapes in fetal hematopoietic stem and progenitor cells with DDX21 knockout 12 samples shares progenitor
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.