UVA irradiation promotes ROS-mediated formation of the common deletion in mitochondrial DNA
RNA-seq (gene expression) · human · 10 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 10 samples: 5 × BJ-5ta exposed to an accumulated dose off 100 J/cm2, vs 5 × BJ-5ta control,Groups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- UVA Irradiation Promotes ROS-Mediated Formation of the Common Deletion in Mitochondrial DNALife (Basel, Switzerland) · 2026
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE302943_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1292871 and SRA study SRP601638. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 10 samples.
How we read this: 2 replicated groups read from 10 sample titles; they account for 10 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9114509 BJ-5ta exposed to an accumulated dose off 100 J/cm2, rep1 BJ-5ta exposed to an ac…
- GSM9114510 BJ-5ta exposed to an accumulated dose off 100 J/cm2, rep2 BJ-5ta exposed to an ac…
- GSM9114511 BJ-5ta exposed to an accumulated dose off 100 J/cm2, rep3 BJ-5ta exposed to an ac…
- GSM9114512 BJ-5ta exposed to an accumulated dose off 100 J/cm2, rep4 BJ-5ta exposed to an ac…
- GSM9114513 BJ-5ta exposed to an accumulated dose off 100 J/cm2, rep5 BJ-5ta exposed to an ac…
- GSM9114514 BJ-5ta control, rep1 BJ-5ta control,
- GSM9114515 BJ-5ta control, rep2 BJ-5ta control,
- GSM9114516 BJ-5ta control, rep3 BJ-5ta control,
- GSM9114517 BJ-5ta control, rep4 BJ-5ta control,
- GSM9114518 BJ-5ta control, rep5 BJ-5ta control,
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.