RNA-seq of liver, kidney, and quadriceps muscle from corylin-treated and control C57BL/6J mice
RNA-seq (gene expression) · mouse · 54 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 54 samples: 54 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE305103_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1302561 and SRA study SRP607184. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 54 sample titles: 54 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9162268 RNA-seq of mus musculus: Young-Male-1-Liver
- GSM9162269 RNA-seq of mus musculus: Young-Male-2-Liver
- GSM9162270 RNA-seq of mus musculus: Young-Male-3-Liver
- GSM9162271 RNA-seq of mus musculus: Old-Male-1-Liver
- GSM9162272 RNA-seq of mus musculus: Old-Male-2-Liver
- GSM9162273 RNA-seq of mus musculus: Old-Male-3-Liver
- GSM9162274 RNA-seq of mus musculus: Corylin-Male-1-Liver
- GSM9162275 RNA-seq of mus musculus: Corylin-Male-2-Liver
- GSM9162276 RNA-seq of mus musculus: Corylin-Male-3-Liver
- GSM9162277 RNA-seq of mus musculus: Young-Female-1-Liver
- GSM9162278 RNA-seq of mus musculus: Young-Female-2-Liver
- GSM9162279 RNA-seq of mus musculus: Young-Female-3-Liver
- GSM9162280 RNA-seq of mus musculus: Old-Female-1-Liver
- GSM9162281 RNA-seq of mus musculus: Old-Female-2-Liver
- GSM9162282 RNA-seq of mus musculus: Old-Female-3-Liver
- GSM9162283 RNA-seq of mus musculus: Corylin-Female-1-Liver
- GSM9162284 RNA-seq of mus musculus: Corylin-Female-2-Liver
- GSM9162285 RNA-seq of mus musculus: Corylin-Female-3-Liver
- GSM9162286 RNA-seq of mus musculus: Young-Male-1-Kidney
- GSM9162287 RNA-seq of mus musculus: Young-Male-2-Kidney
- GSM9162288 RNA-seq of mus musculus: Young-Male-3-Kidney
- GSM9162289 RNA-seq of mus musculus: Old-Male-1-Kidney
- GSM9162290 RNA-seq of mus musculus: Old-Male-2-Kidney
- GSM9162291 RNA-seq of mus musculus: Old-Male-3-Kidney
- GSM9162292 RNA-seq of mus musculus: Corylin-Male-1-Kidney
- GSM9162293 RNA-seq of mus musculus: Corylin-Male-2-Kidney
- GSM9162294 RNA-seq of mus musculus: Corylin-Male-3-Kidney
- GSM9162295 RNA-seq of mus musculus: Young-Female-1-Kidney
- GSM9162296 RNA-seq of mus musculus: Young-Female-2-Kidney
- GSM9162297 RNA-seq of mus musculus: Young-Female-3-Kidney
- GSM9162298 RNA-seq of mus musculus: Old-Female-1-Kidney
- GSM9162299 RNA-seq of mus musculus: Old-Female-2-Kidney
- GSM9162300 RNA-seq of mus musculus: Old-Female-3-Kidney
- GSM9162301 RNA-seq of mus musculus: Corylin-Female-1-Kidney
- GSM9162302 RNA-seq of mus musculus: Corylin-Female-2-Kidney
- GSM9162303 RNA-seq of mus musculus: Corylin-Female-3-Kidney
- GSM9162304 RNA-seq of mus musculus: Young-Male-1-Quadriceps
- GSM9162305 RNA-seq of mus musculus: Young-Male-2-Quadriceps
- GSM9162306 RNA-seq of mus musculus: Young-Male-3-Quadriceps
- GSM9162307 RNA-seq of mus musculus: Old-Male-1-Quadriceps
+ 14 more — browse all 54 samples with per-sample file links →
- GSE248297 Liver RNA-seq from male C57Bl/6J on a ketogenic diet 15 samples shares c57bl, rna-seq, liver
- GSE226609 Mouse lung tissue RNA-Seq from C57Bl6 wild type and ALOX15 KO mice with and without house dust mite (HDM) exposure. 20 samples shares c57bl, rna-seq
- GSE228960 Bulk RNA-Seq from kidneys of uninephrectomized db/db mice as a model of severe diabetic kidney disease 28 samples shares rna-seq, kidney
- GSE306116 Caspase-3 Control of RNA Splicing and Mitochondrial Dynamics in Microglia during Parkinson’s Disease [RNA-Seq] 12 samples shares rna-seq, control
- GSE331228 RNA-seq profiling of liver and lung of CLP mice(6h) 12 samples shares rna-seq, liver
- GSE220675 Kidney Single-Cell Atlas Reveals Macrophage Heterogeneity in Progression and Regression of Cisplatin Induced AKI [scRNA-seq] 11 samples shares rna-seq, kidney
- GSE297388 Spatial transcriptomics and scRNA-sequencing on gastrocnemius muscle form B6-mdx and D2-mdx mice 8 samples shares rna-seq, muscle
- GSE316313 Single-cell RNA sequencing of MC38 subcutaneous allograft tumors in C57BL/6J mice treated with FOLFOX alone or in combination with a composite probiotics 9 samples shares c57bl
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.