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RNA sequencing analysis of embryos exposed to nanoplastics: effects on developmental and transcriptomic alteration

GSE305223 Mus musculus Expression profiling by high throughput sequencing 8 samples Submitted 2025/08/18 Platform GPL24247
Summary
The increasing prevalence of nanoplastics (NPs) in the environment has raised concerns regarding their potential risks to ecosystems and human health. NP exposure has been shown to interfere with cellular processes; however, their effects on preimplantation embryonic development remain unclear. Given the critical role of zygotic genome activation and early cell cycle progression, disruption during this period can significantly affect embryonic viability. To investigate the molecular effects of polymethylmethacrylate (PMMA)-NPs on early embryonic development, mouse zygotes were exposed to 0.1 or 1 mg/mL PMMA-NPs, and RNA sequencing was performed on four-cell stage embryos. Differential gene expression analysis revealed that 0.1 mg/mL NP exposure affected genes related to DNA damage repair, transcriptional regulation, and cellular homeostasis while 1 mg/mL NP exposure altered the expression of genes associated with apoptotic signaling, cell cycle arrest, and failure of blastocyst formation, suggesting a concentration-dependent effect on developmental progression. Thus, PMMA-NP exposure disrupts early embryonic development by inducing specific transcriptomic changes that potentially affect genome integrity and developmental competency. This study provides new insights into the molecular mechanisms underlying NP-induced embryo toxicity and elucidate the effect of NPs on preimplantation embryo development.
Published in
Transcriptomic analysis of preimplantation mouse embryos exposed to nanoplastics using RNA sequencing
You HJ, Jo YJ, Kwon J et al. · Scientific reports 2026 · PMID 41495107 · doi:10.1038/s41598-025-29446-9
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Direct links to NCBI, no account and no request form: the whole study as GSE305223_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 8 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1304858 and SRA study SRP608405. Searching any of these in the dataset finder brings you back here.

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