Dosage-dependent role of Gata3 in primitive endoderm and trophectoderm specification in embryonic stem cells [RNA-seq]
RNA-seq (gene expression) · mouse · 16 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 16 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE306024_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1308969 and SRA study SRP610366. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 16 more — browse all 16 samples with per-sample file links →
- GSE306026 Dosage-dependent role of Gata3 in primitive endoderm and trophectoderm specification in embryonic stem cells 22 samples shares gata3, dosage-dependent, trophectoderm, specification, primitive, embryonic, endoderm
- GSE306025 Dosage-dependent role of Gata3 in primitive endoderm and trophectoderm specification in embryonic stem cells [ChIP-seq] 5 samples shares gata3, dosage-dependent, trophectoderm, specification, primitive, embryonic, endoderm
- GSE287115 Emergence of Endothelial Cell Subtypes and Role of Cell Cycle Control in Arterial-Venous Specification During Embryonic Vascular Development [bulk RNA-seq] 27 samples shares specification, embryonic, rna-seq
- GSE284144 Establishing competence for trophectoderm specification in mouse embryos before the first lineage bifurcation [RNA-seq] 22 samples shares trophectoderm, specification, rna-seq
- GSE250177 Chromatin Landscape Instructs Precise Transcription Factor Regulome during Embryonic Lineage Specification [RNA-seq] 12 samples shares specification, embryonic, rna-seq
- GSE287112 Emergence of Endothelial Cell Subtypes and Role of Cell Cycle Control in Arterial-Venous Specification During Embryonic Vascular Development [scRNA-seq] 6 samples shares specification, embryonic, rna-seq
- GSE254428 Transcriptional remodeling by OTX2 directs specification and patterning of mammalian definitive endoderm [scRNA-seq] 2 samples shares specification, endoderm, rna-seq
- GSE230597 Bulk RNA-seq of ILC2, Tconv, Th2, Treg Gata3hi and Treg Gatalo from the lungs of IL-33 treated mice 22 samples shares gata3, rna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.