RNA-seq of mouse lung tissue after irradiation
RNA-seq (gene expression) · mouse · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples: 3 × RNA seq of Mouse IR_8d vs 3 × RNA seq of Mouse IR_11d vs 3 × RNA seq of Mouse IR_14d vs 3 × RNA seq of Mouse NoIGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- N-phenylquinazolin-4-amine-based EGFR TKIs suppress pulmonary fibrosis by modulating the EGFR/ERBB3 axis in epithelial-macrophage interactionCommunications biology · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE306230_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1309721 and SRA study SRP610793. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 12 samples.
How we read this: 4 replicated groups read from 12 sample titles; they account for 12 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9195226 RNA seq of Mouse IR_8d_1 RNA seq of Mouse IR_8d
- GSM9195227 RNA seq of Mouse IR_8d_2 RNA seq of Mouse IR_8d
- GSM9195228 RNA seq of Mouse IR_8d_3 RNA seq of Mouse IR_8d
- GSM9195229 RNA seq of Mouse IR_11d_1 RNA seq of Mouse IR_11d
- GSM9195230 RNA seq of Mouse IR_11d_2 RNA seq of Mouse IR_11d
- GSM9195231 RNA seq of Mouse IR_11d_3 RNA seq of Mouse IR_11d
- GSM9195232 RNA seq of Mouse IR_14d_1 RNA seq of Mouse IR_14d
- GSM9195233 RNA seq of Mouse IR_14d_2 RNA seq of Mouse IR_14d
- GSM9195234 RNA seq of Mouse IR_14d_3 RNA seq of Mouse IR_14d
- GSM9195235 RNA seq of Mouse NoIR_1 RNA seq of Mouse NoI
- GSM9195236 RNA seq of Mouse NoIR_2 RNA seq of Mouse NoI
- GSM9195237 RNA seq of Mouse NoIR_3 RNA seq of Mouse NoI
- GSE300288 Single-cell and spatial transcriptomics analysis of tobacco-associated lung adenocarcinoma development, and in response to targeting inflammation alone or in combination with immune checkpoint blockade in precancerous phase [scRNA-seq] 31 samples shares rna-seq, lung
- GSE264278 TIme-cource single-cell RNA-seq analysis of bleomycin and LPS-induced lung injury and fibrosis 18 samples shares rna-seq, lung
- GSE297298 Single-cell RNA-sequencing identifies anti-cancer immune phenotypes in the early lung metastatic niche during breast cancer 18 samples shares rna-seq, lung
- GSE331228 RNA-seq profiling of liver and lung of CLP mice(6h) 12 samples shares rna-seq, lung
- GSE326100 scRNA-seq of mouse cochlea organoid cells 768 samples shares rna-seq
- GSE311449 Single cell RNA-seq of mouse brain vascular cells with Smart-seq2 method 391 samples shares rna-seq
- GSE319614 Bulk RNA-seq transcriptome profiling of hippocampus across 17 autism spectrum disorder mouse models 269 samples shares rna-seq
- GSE326452 Bulk RNA-seq of mouse brain following closed head injury: role of IL-1R1 signaling 200 samples shares rna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.