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RNA sequencing and bioinformatics analysis of blood from patients with cortical cataract

GSE308087 Homo sapiens Expression profiling by high throughput sequencing 6 samples Submitted 2026/05/15 Platform GPL9052
Summary
This dataset contains raw and processed transcriptomic data derived from peripheral blood mononuclear cells (PBMCs) of patients with age-related cataract (ARC) and matched healthy control individuals. The study aimed to identify systemic gene expression signatures associated with ARC pathogenesis. A total of 6 participants were enrolled in this study, including 3 ARC patients and 3 age- and gender-matched healthy controls.Total RNA was extracted, and library construction was performed using the Illumina TruSeq Stranded mRNA LT Sample Prep Kit. Sequencing was carried out on the Illumina NovaSeq 6000]platform with a 150-bppaired-end strategy. Preliminary bioinformatic analysis revealed 311 increased DEGs and 268 decreased DEGs between ARC patients and refractive cataract patients (|log2FC| > 2and adjusted p-value < 0.05. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses of these DEGs highlighted significant alterations in several biological processes and pathways.This dataset provides a resource for understanding the potential role of systemic factors and immune responses in ARC development, and may facilitate the discovery of novel biomarkers for this common ocular disease.
Published in
RNA sequencing and bioinformatics analysis of blood from patients with cortical cataracts
Li Q, Zhu L · BMC ophthalmology 2026 · PMID 41888716 · doi:10.1186/s12886-026-04764-2
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Direct links to NCBI, no account and no request form: the whole study as GSE308087_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 6 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1328722 and SRA study SRP620486. Searching any of these in the dataset finder brings you back here.

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