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Pyroptosis modulates multiple immune cell populations in targeted therapy-treated melanoma

GSE308595 Mus musculus Expression profiling by high throughput sequencing 4 samples Submitted 2025/11/20 Platform GPL24247
Summary
Treatment of melanoma with BRAF inhibitors plus MEK inhibitors (BRAFi + MEKi) stimulates an intratumoral immune response, in part through pyroptosis mediated by the pore-forming protein gasdermin E (GSDME/Gsdme). How GSDME-mediates effects on tumoral immunity is not well characterized. Using single-cell RNA-sequencing (scRNA-seq) and flow cytometry, we show that Gsdme knockout (KO) tumors have decreased infiltration of T cells, natural killer (NK) cells and regulatory T cells (Tregs) following BRAFi + MEKi-treatment compared to control tumors. Infiltrated Tregs in Gsdme KO tumors displayed decreased expression of the interleukin 2 receptor and phenotypic markers that are associated with a suppressive function of Tregs. Furthermore, intratumoral, phenotypically suppressive Tregs were decreased after BRAFi + MEKi treatment in Gsdme KO tumors expressing a pyroptosis-defective mutant form of Gsdme (T6E) compared to tumors expressing wild-type Gsdme. Use of a TLR9 agonist, which alters the tumor immune microenvironment, decreased the regrowth of Gsdme KO tumors on BRAFi + MEKi treatment, correlating to a further decrease in intratumoral Tregs. Overall, we show a critical role of GSDME in the modulation of intratumoral immune cells, particularly Tregs, in BRAFi + MEKi-treated melanoma.
Published in
Pyroptosis Modulates Multiple Immune Cell Populations in Targeted Therapy-Treated Melanoma
Wilski-Cronin NA, Erkes DA, Purwin TJ et al. · Cancer immunology research 2026 · PMID 41296494 · doi:10.1158/2326-6066.CIR-25-0444
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Direct links to NCBI, no account and no request form: the whole study as GSE308595_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 4 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1331664 and SRA study SRP622300. Searching any of these in the dataset finder brings you back here.

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