Temporal Dynamics in Murine Cardiac Transcriptome following Myocardial Infarction
RNA-seq (gene expression) · mouse · 30 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 30 samples: 10 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Temporal Dynamics in Murine Cardiac Transcriptome Following Myocardial InfarctionCirculation research · 2026
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE308914_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1333400 and SRA study SRP625631. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 30 samples.
How we read this: 10 replicated groups read from 30 sample titles; they account for 30 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9256214 Day 0,Female,Replicate 1 Day 0,Female,
- GSM9256215 Day 0,Female,Replicate 2 Day 0,Female,
- GSM9256216 Day 0,Female,Replicate 3 Day 0,Female,
- GSM9256217 Day 0,Male,Replicate 1 Day 0,Male,
- GSM9256218 Day 0,Male,Replicate 2 Day 0,Male,
- GSM9256219 Day 0,Male,Replicate 3 Day 0,Male,
- GSM9256220 Day 1,Female,Replicate 1 Day 1,Female,
- GSM9256221 Day 1,Female,Replicate 2 Day 1,Female,
- GSM9256222 Day 1,Female,Replicate 3 Day 1,Female,
- GSM9256223 Day 1,Male,Replicate 1 Day 1,Male,
- GSM9256224 Day 1,Male,Replicate 2 Day 1,Male,
- GSM9256225 Day 1,Male,Replicate 3 Day 1,Male,
- GSM9256226 Day 4,Female,Replicate 1 Day 4,Female,
- GSM9256227 Day 4,Female,Replicate 2 Day 4,Female,
- GSM9256228 Day 4,Female,Replicate 3 Day 4,Female,
- GSM9256229 Day 4,Male,Replicate 1 Day 4,Male,
- GSM9256230 Day 4,Male,Replicate 2 Day 4,Male,
- GSM9256231 Day 4,Male,Replicate 3 Day 4,Male,
- GSM9256232 Day 7,Female,Replicate 1 Day 7,Female,
- GSM9256233 Day 7,Female,Replicate 2 Day 7,Female,
- GSM9256234 Day 7,Female,Replicate 3 Day 7,Female,
- GSM9256235 Day 7,Male,Replicate 1 Day 7,Male,
- GSM9256236 Day 7,Male,Replicate 2 Day 7,Male,
- GSM9256237 Day 7,Male,Replicate 3 Day 7,Male,
- GSM9256238 Day 28,Female,Replicate 1 Day 28,Female,
- GSM9256239 Day 28,Female,Replicate 2 Day 28,Female,
- GSM9256240 Day 28,Female,Replicate 3 Day 28,Female,
- GSM9256241 Day 28,Male,Replicate 1 Day 28,Male,
- GSM9256242 Day 28,Male,Replicate 2 Day 28,Male,
- GSM9256243 Day 28,Male,Replicate 3 Day 28,Male,
- GSE304090 Pharmacological inhibition of the epigenetic enzyme EZH2 attenuates cardiac dysfunction and mitigates lipid metabolism perturbations in a murine model of myocardial infarction 15 samples shares myocardial, infarction, cardiac
- GSE267256 Bulk RNA-seq analysis reveals the crucial role of Collagen triplex helix repeat containing-1 (Cthrc1) cardiac fibroblasts for ventricular remodeling after myocardial infarction 17 samples shares myocardial, infarction, cardiac
- GSE308859 Integrated Spatial Transcriptomics and Single-Cell RNA Sequencing Reveal Lars2-Mediated Spatiotemporal Dynamics of Myocardial Remodeling in a Mouse Model of Transverse Aortic Constriction (TAC) 8 samples shares myocardial, temporal, dynamics
- GSE229427 Tracking spatio-temporal dynamics of the endothelial niche during fetal hematopoiesis 216 samples shares temporal, dynamics
- GSE306718 Macrophage Cluster of Differentiation 163 promotes post-infarction cardiac repair and preserves left ventricular function via osteopontin 37 samples shares infarction, cardiac
- GSE284404 Increased cardiac macrophages in Sorbs2-deficient hearts: revealing a potential role for macrophage in responding to embryonic myocardial abnormalities 35 samples shares myocardial, cardiac
- GSE316576 Altered Nephron Progenitor Cell Dynamics Drive Long-Term Kidney Abnormalities Following Preterm Birth in Mice. 32 samples shares following, dynamics
- GSE280373 Spatiotemporal dynamics of the cardioimmune niche during lesion repair [scRNA-seq] 28 samples shares temporal, dynamics
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.