GEO series
Nickel exposure disrupts epigenetic repression of developmental genes in mouse embryonic stem cells
GSE310598
Mus musculus
Expression profiling by high throughput sequencing
16 samples
2026/04/08
GPL34290
Summary
Nickel (Ni) is a naturally occurring heavy metal widely found in the environment, but anthropogenic activities such as industrial processes and the widespread use of Ni-containing products have elevated its environmental levels. Ni exposure poses significant health risks, and both vertebrate models and epidemiological studies link it to developmental toxicity. However, the mechanisms underlying Ni-induced developmental toxicity remain poorly understood. In this study, we investigated how Ni exposure affects pluripotency in mouse embryonic stem cells (mESCs). Ni exposure led to aberrant activation of genes associated with mesodermal and endodermal lineages, while ectodermal genes remained largely unaffected. Despite this induction of lineage-associated genes, key pluripotency genes were not downregulated, suggesting a metastable or incomplete differentiation state. Examination of the underlying mechanisms revealed that Ni exposure induced a loss of the repressive histone modification H3K27me3 at bivalent mesodermal gene promoters, without altering its global levels. Pharmacological inhibition of H3K27me3 demethylases attenuated Ni-induced gene activation, confirming that H3K27me3 loss contributes to this process. ESCs are known to naturally exist as heterogeneous populations that fluctuate between naïve and lineage-primed pluripotent states. Maintaining this balance is essential for proper differentiation. Our findings suggest that Ni exposure disrupts this equilibrium by prematurely inducing mesodermal and endodermal programs. Such dysregulation of early pluripotent states may bias cell-fate decisions and contribute to Ni-induced developmental toxicity, providing a mechanistic link between Ni exposure and developmental toxicity.
Download
NCBI GEO page ↗
Paper (PMID 41932553) ↗
{# Names what the click gives you. "Open in finder" meant nothing to a
visitor who arrived from a search engine and has never seen the tool. #}
Find more
mouse RNA-seq datasets →
Similar datasets
- GSE292862 Modelling mouse embryogenesis from chemically induced totipotent stem cells 22 samples
- GSE185862 A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation 95 samples
- GSE293315 MRPGRX2 Antagonist Treatment Prevents Inflammation and Disease in a Mouse Model of Atopic Dermatitis Dataset 2 35 samples
- GSE255837 Dysregulation of the Normal Wound Healing Cascade in Volumetric Muscle Loss Injury 30 samples
- GSE341948 Multi-tissue transcriptomic landscape reveals synergistic mechanisms of exercise and GLP-1 agonist in ameliorating diabetic phenotypes in db/db mice 12 samples
- GSE304862 Semaglutide and exercise synergy in obesity: preserving muscle mass and uncovering organ crosstalk 209 samples
- GSE337190 CAR-NKT cells induce low cytokine release syndrome by targeting hyperinflammatory macrophages with mitigation from GM-SCF inhibition. 24 samples
- GSE306116 Caspase-3 Control of RNA Splicing and Mitochondrial Dynamics in Microglia during Parkinson’s Disease [RNA-Seq] 12 samples
Share this dataset
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.