Transcriptional profiling of 53 tissue samples from germ-free and conventionally raised mice
Expression microarray · mouse · 53 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Mus musculus (mouse)
- Samples
- 53 samples: 53 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE31115_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA144667. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 53 sample titles: 53 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM434969 Mouse 583 liver
- GSM434970 Mouse 584 liver
- GSM434971 Mouse 585 liver
- GSM434972 Mouse 586 liver
- GSM434973 Mouse 587 liver
- GSM434974 Mouse 588 liver
- GSM434975 Mouse 589 liver
- GSM434976 Mouse 590 liver
- GSM434977 Mouse 591 liver
- GSM434978 Mouse 592 liver
- GSM434979 Mouse 593 liver
- GSM434980 Mouse 594 liver
- GSM434981 Mouse 595 liver
- GSM434982 Mouse 596 liver
- GSM434983 Mouse 597 liver
- GSM434984 Mouse 598 liver
- GSM434985 Mouse 599 liver
- GSM434986 Mouse 600 liver
- GSM434987 Mouse 601 liver
- GSM435025 Mouse 584 epidimymal fat
- GSM435026 Mouse 585 epidimymal fat
- GSM435027 Mouse 586 epidimymal fat
- GSM435028 Mouse 588 epidimymal fat
- GSM435029 Mouse 589 epidimymal fat
- GSM435030 Mouse 590 epidimymal fat
- GSM435031 Mouse 591 epidimymal fat
- GSM435032 Mouse 592 epidimymal fat
- GSM435033 Mouse 593 epidimymal fat
- GSM435034 Mouse 594 epidimymal fat
- GSM435035 Mouse 595 epidimymal fat
- GSM435036 Mouse 596 epidimymal fat
- GSM435037 Mouse 598 epidimymal fat
- GSM435038 Mouse 599 epidimymal fat
- GSM435039 Mouse 600 epidimymal fat
- GSM435040 Mouse 601 epidimymal fat
- GSM435041 Mouse 602 epidimymal fat
- GSM435042 Mouse 583 subcutaneous fat
- GSM435043 Mouse 584 subcutaneous fat
- GSM435044 Mouse 585 subcutaneous fat
- GSM435045 Mouse 586 subcutaneous fat
+ 13 more — browse all 53 samples with per-sample file links →
- GSE295338 RNA-seq profiling transcriptome of liver endothelial cells of conventionally raised (CONV-R) and germ-free (GF) mice. 13 samples shares conventionally, germ-free, raised
- GSE27950 Genome-wide Expression Differences in Colonocytes Isolated From Conventionally Raised or Germfree Mice 12 samples shares conventionally, raised
- GSE70922 Expression data from germ-free and conventional mice fed lard or fish oil for 11 weeks 24 samples shares germ-free
- GSE253945 Tissue RNAsSeq of germ-free IL10KO versus WT mice in the presence or absence of human gut microbes 108 samples shares germ-free
- GSE247122 Effect of acute and chronic ATF6 activation on gene expression in the colonic epithelium, in specific pathogen-free and germ-free mice. 37 samples shares germ-free
- GSE107757 Genome wide study of microglia in Specific-pathogen-free (SPF) and Germ-free (GF) mice at different stages in males and females. 30 samples shares germ-free
- GSE107925 Genome wide study of microglia in Specific-pathogen-free (SPF) and Germ-free (GF) mice at different stages in males and females (RNA-Seq) 26 samples shares germ-free
- GSE329359 Single cell RNA sequencing of gp33 tetramer-positive CD8 T cells sorted from the SI-LP and spleen of germ-free and SPF mice 16 days after LCMV Docile infection [scRNA-Seq 10x] 12 samples shares germ-free
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.