← BioTransfer GEO Dataset Finder
GEO series

Single-cell transcriptome analysis of bronchoalveolar lavage in SARS-CoV-2 Omicron severe patients

GSE312913 Homo sapiens Expression profiling by high throughput sequencing 3 samples Submitted 2026/05/15 Platform GPL24676
Summary
To delineate the single-cell transcriptional landscape of the lungs in severe patients infected with the Omicron variant of SARS-CoV-2, we performed single-cell RNA sequencing on bronchoalveolar lavage fluid samples collected within 24 hours of ICU admission.
Published in
Variant-divergent death: Omicron intensifies bystander T-cell apoptosis via GDF15-BCL2L13
Gao C, Chen H, Chi Y et al. · Cell death discovery 2026 · PMID 41896204 · doi:10.1038/s41420-026-03079-x
This dataset
Download

Direct links to NCBI, no account and no request form: the whole study as GSE312913_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 3 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1377592 and SRA study SRP653457. Searching any of these in the dataset finder brings you back here.

Samples in this study

The sample list for this study is not cached yet. Press Sort into groups and it will be fetched from NCBI.

+ 3 more — browse all 3 samples with per-sample file links →

Similar datasets

Search all human RNA-seq datasets in GEO →

Share this dataset

Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.