← BioTransfer GEO Dataset Finder
GEO series

Overactivation of Cdc42 GTPase Impairs the Cytotoxic Function of NK Cells from Old Individuals towards Senescent Fibroblasts

GSE313986 Homo sapiens Expression profiling by high throughput sequencing 6 samples Submitted 2025/12/21 Platform GPL24676
Summary
Senescent fibroblasts accumulate in the connective tissue of all organs and promote organ aging and aging-related diseases. The underlying mechanisms for the accumulation of senescent fibroblasts are poorly understood. Natural killer (NK) cells of innate immunity play a critical role in the removal of tissue resident senescent cells. We here show that NK cells from old adults and old mice fail to efficiently remove senescent fibroblasts due to severely reduced efficiency of aged NK cells to induce perforin mediated membrane disruptions and granzyme B induced targeted death of senescent fibroblasts. We demonstrate elevated activation of the small Cdc42 Rho GTPase in aged NK cells to be responsible for the disruption of the microtubular organisation of aged NK cells. A correct microtubular organisation of NK cells is essential for cellular polarity, degranulation of perforin and granzyme B into the synaptic cleft between NK cells and senescent fibroblasts, and for a proper function of energy metabolism. Attenuation of the elevated activity of Cdc42 in aged human NK cells with CASIN, a small molecule Cdc42 inhibitor, rebalances Cdc42 activity to a young level, restores a proper perforin and granzyme B release and attenuates reduced ATP levels and mitochondrial dysfunction in aged NK cells to result in a youthful cytotoxicity of aged NK cells against senescent cells. Collectively, we identified a previously unreported molecular mechanism underlying functional impairment of NK cells from older adults. In perspective, our data hold promise to develop novel strategies against age-related disorders driven by tissue-resident senescent fibroblasts.
Published in
Overactivation of Cdc42 GTPase Impairs the Cytotoxic Function of NK Cells From Old Individuals Towards Senescent Fibroblasts
Koroma AK, Singh K, Wang Y et al. · Aging cell 2026 · PMID 41655129 · doi:10.1111/acel.70398
This dataset
Download

Direct links to NCBI, no account and no request form: the whole study as GSE313986_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 6 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1387473 and SRA study SRP655705. Searching any of these in the dataset finder brings you back here.

Samples in this study

The sample list for this study is not cached yet. Press Sort into groups and it will be fetched from NCBI.

+ 6 more — browse all 6 samples with per-sample file links →

Similar datasets

Search all human RNA-seq datasets in GEO →

Share this dataset

Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.