NAD⁺ Augmentation by Nicotinamide Riboside Engages SLIT2/ROBO1 Signaling to Attenuate Th17 Inflammation in Psoriasis
RNA-seq (gene expression) · human · 23 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 23 samples: 23 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE314390_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1390800 and SRA study SRP656511. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 23 sample titles: 23 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9395548 PNR_1_naive_cd4+_baseline
- GSM9395549 PNR_1_naive_cd4+_NR
- GSM9395550 PNR_4_naive_cd4+_baseline
- GSM9395551 PNR_4_naive_cd4+_NR
- GSM9395552 PNR_14_naive_cd4+_baseline
- GSM9395553 PNR_14_naive_cd4+_NR
- GSM9395554 PNR_19_naive_cd4+_baseline
- GSM9395555 PNR_19_naive_cd4+_NR
- GSM9395556 PNR_34_naive_cd4+_baseline
- GSM9395557 PNR_34_naive_cd4+_NR
- GSM9395558 PNR_35_naive_cd4+_baseline
- GSM9395559 PNR_35_naive_cd4+_NR
- GSM9395560 PNR_1_activated_cd4+_baseline
- GSM9395561 PNR_1_activated_cd4+_NR
- GSM9395562 PNR_4_activated_cd4+_baseline
- GSM9395563 PNR_4_activated_cd4+_NR
- GSM9395564 PNR_14_activated_cd4+_baseline
- GSM9395565 PNR_14_activated_cd4+_NR
- GSM9395566 PNR_19_activated_cd4+_NR
- GSM9395567 PNR_34_activated_cd4+_baseline
- GSM9395568 PNR_34_activated_cd4+_NR
- GSM9395569 PNR_35_activated_cd4+_baseline
- GSM9395570 PNR_35_activated_cd4+_NR
- GSE286315 HOXC4 Promotes Proliferation of Endometriotic Stromal Cells via the SLIT2-ROBO1 Axis 12 samples shares slit2, robo1
- GSE52471 Dominant Th1 and Minimal Th17 Skewing in Discoid Lupus Revealed by Transcriptomic Comparison with Psoriasis 38 samples shares th17, psoriasis
- GSE329527 Antigen-restricted Candida albicans Th17 cells link oral-gut immunity and adopt pathogenic features during intestinal inflammation 81 samples shares th17
- GSE313775 Circulating Th1, Th1/17, and Th17 cell bulk RNA sequencing from endometriosis patients and controls 66 samples shares th17
- GSE307690 Clinical, physiologic, imaging, and molecular responses to cannabis smoking: the Canadian Users of Cannabis Smoke (CANUCK) Study 61 samples shares nad
- GSE164893 Post-transcriptional regulation of proliferation and quiescence (mRNAdecay) 48 samples shares nad
- GSE280021 Dynamics of Th1/Th17 Responses and Antimicrobial Pathways in Leprosy Skin Lesions 45 samples shares th17
- GSE86146 Single-Cell RNA-Seq Analysis Maps Development of Human Germline Cells and Gonadal- Niche Interactions 43 samples shares nad
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.