Bulk RNA-seq of multi-tissue transcriptomes from control and DHEA-treated mice (ovary, uterus, thymus, brain, heart, intestine, kidney, liver and spleen)
RNA-seq (gene expression) · mouse · 20 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 20 samples: 20 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE316220_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1401828 and SRA study SRP661583. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 20 sample titles: 20 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9447501 sasame oil for mice, Ovary
- GSM9447502 sasame oil for mice, Thymus
- GSM9447503 sasame oil for mice, Brain
- GSM9447504 sasame oil for mice, Intestine
- GSM9447505 sasame oil for mice, Utery
- GSM9447506 sasame oil for mice, Lung
- GSM9447507 sasame oil for mice, Spleen
- GSM9447508 sasame oil for mice, Kidney
- GSM9447509 sasame oil for mice, Heart
- GSM9447510 sasame oil for mice, Liver
- GSM9447511 DHEA for mice, Ovary
- GSM9447512 DHEA for mice, Thymus
- GSM9447513 DHEA for mice, Brain
- GSM9447514 DHEA for mice, Intestine
- GSM9447515 DHEA for mice, Utery
- GSM9447516 DHEA for mice, Lung
- GSM9447517 DHEA for mice, Spleen
- GSM9447518 DHEA for mice, Kidney
- GSM9447519 DHEA for mice, Heart
- GSM9447520 DHEA for mice, Liver
- GSE98816 Single cell RNA-seq of mouse brain vascular transcriptomes 3186 samples shares transcriptomes, rna-seq
- GSE99235 Single cell RNA-seq of mouse lung vascular transcriptomes 1504 samples shares transcriptomes, rna-seq
- GSE99058 Single cell RNA-seq of mouse brain astrocyte transcriptomes 250 samples shares transcriptomes, rna-seq
- GSE342349 CT26 multi-tissue RNA-seq under immunotherapy combinations 72 samples shares multi-tissue, rna-seq
- GSE265835 The tissue-resident regulatory T cell pool is shaped by transient multi-tissue migration and a conserved residency program. Bulk RNA-Seq profiling of mouse tissue Tregs. 40 samples shares multi-tissue, rna-seq
- GSE304112 Establishment of sex-specific liver transcriptomes and H3K9me3 profiles during sexual maturity: the impact of maternal obesity [RNA-seq] 32 samples shares transcriptomes, rna-seq
- GSE289523 Gene expression profiles of WT and epithlial GSDMD ko mouse intestine [bulk RNA-seq] 30 samples shares intestine, rna-seq
- GSE301477 RNA-seq analysis of arterial smooth muscle cells (ASMCs) isolated from the lung, heart, aorta, stomach, intestine, kidney and bladder 22 samples shares intestine, rna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.