Peripheral blood mononuclear cells single-cell landscape of newly diagnosed NK/T cell lymphoma patients
Single-cell RNA-seq · human · 32 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart.
- Organism
- Homo sapiens (human)
- Samples
- 32 samples: 20 × PBMC, newly diagnosed NKTCL, vs 12 × PBMC, healthy,Groups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Peripheral blood immune profiling reveals key signatures in newly diagnosed NK/T cell lymphoma patientsTheranostics · 2026
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE318371_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA1370270 and SRA study SRP649454. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 32 samples.
How we read this: 2 replicated groups read from 32 sample titles; they account for 32 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9493320 PBMC, healthy, 1 PBMC, healthy,
- GSM9493321 PBMC, healthy, 2 PBMC, healthy,
- GSM9493322 PBMC, healthy, 3 PBMC, healthy,
- GSM9493323 PBMC, healthy, 4 PBMC, healthy,
- GSM9493324 PBMC, healthy, 5 PBMC, healthy,
- GSM9493325 PBMC, healthy, 6 PBMC, healthy,
- GSM9493326 PBMC, healthy, 7 PBMC, healthy,
- GSM9493327 PBMC, healthy, 8 PBMC, healthy,
- GSM9493328 PBMC, healthy, 9 PBMC, healthy,
- GSM9493329 PBMC, healthy, 10 PBMC, healthy,
- GSM9493330 PBMC, healthy, 11 PBMC, healthy,
- GSM9493331 PBMC, healthy, 12 PBMC, healthy,
- GSM9493332 PBMC, newly diagnosed NKTCL, 6 PBMC, newly diagnosed N…
- GSM9493333 PBMC, newly diagnosed NKTCL, 9 PBMC, newly diagnosed N…
- GSM9493334 PBMC, newly diagnosed NKTCL, 14 PBMC, newly diagnosed N…
- GSM9493335 PBMC, newly diagnosed NKTCL, 16 PBMC, newly diagnosed N…
- GSM9493336 PBMC, newly diagnosed NKTCL, 18 PBMC, newly diagnosed N…
- GSM9493337 PBMC, newly diagnosed NKTCL, 19 PBMC, newly diagnosed N…
- GSM9493338 PBMC, newly diagnosed NKTCL, 20 PBMC, newly diagnosed N…
- GSM9493339 PBMC, newly diagnosed NKTCL, 22 PBMC, newly diagnosed N…
- GSM9493340 PBMC, newly diagnosed NKTCL, 25 PBMC, newly diagnosed N…
- GSM9493341 PBMC, newly diagnosed NKTCL, 27 PBMC, newly diagnosed N…
- GSM9493342 PBMC, newly diagnosed NKTCL, 30 PBMC, newly diagnosed N…
- GSM9493343 PBMC, newly diagnosed NKTCL, 31 PBMC, newly diagnosed N…
- GSM9493344 PBMC, newly diagnosed NKTCL, 36 PBMC, newly diagnosed N…
- GSM9493345 PBMC, newly diagnosed NKTCL, 37 PBMC, newly diagnosed N…
- GSM9493346 PBMC, newly diagnosed NKTCL, 38 PBMC, newly diagnosed N…
- GSM9493347 PBMC, newly diagnosed NKTCL, 39 PBMC, newly diagnosed N…
- GSM9493348 PBMC, newly diagnosed NKTCL, 41 PBMC, newly diagnosed N…
- GSM9493349 PBMC, newly diagnosed NKTCL, 44 PBMC, newly diagnosed N…
- GSM9493350 PBMC, newly diagnosed NKTCL, 51 PBMC, newly diagnosed N…
- GSM9493351 PBMC, newly diagnosed NKTCL, 52 PBMC, newly diagnosed N…
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.