Highlights of Tuft Cells in Mouse and Human Salivary Glands
RNA-seq (gene expression) · mouse · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples: 3 × Knockout, female mouse vs 3 × Knockout, male mouse vs 3 × Wildtype, female mouse vs 3 × Wildtype, male mouseGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE320144_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1426449 and SRA study SRP678479. Searching any of these in the dataset finder brings you back here.
Supports a case/control comparison: 6 samples read as cases, 6 as controls.
How we read this: 4 replicated groups read from 12 sample titles; they account for 12 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9535616 Knockout, female mouse 1 Knockout, female mouse
- GSM9535617 Knockout, female mouse 2 Knockout, female mouse
- GSM9535618 Knockout, female mouse 3 Knockout, female mouse
- GSM9535619 Knockout, male mouse 1 Knockout, male mouse
- GSM9535620 Knockout, male mouse 2 Knockout, male mouse
- GSM9535621 Knockout, male mouse 3 Knockout, male mouse
- GSM9535622 Wildtype, female mouse 1 Wildtype, female mouse
- GSM9535623 Wildtype, female mouse 2 Wildtype, female mouse
- GSM9535624 Wildtype, female mouse 3 Wildtype, female mouse
- GSM9535625 Wildtype, male mouse 1 Wildtype, male mouse
- GSM9535626 Wildtype, male mouse 2 Wildtype, male mouse
- GSM9535627 Wildtype, male mouse 3 Wildtype, male mouse
- GSE319064 Effects of diet-induced obesity and bariatric surgery (sleeve gastrectomy) on gene expression and signaling pathways in mouse salivary glands 9 samples shares salivary, glands
- GSE251691 Loss of STIM1/2 in salivary glands disrupts ANO1 function but does not induce Sjögren’s syndrome. 15 samples shares salivary, glands
- GSE272766 Muscarinic agonism restores degenerated salivary glands through a calcium-ATP metabolic axis 9 samples shares salivary, glands
- GSE248365 Transcriptome Analysis of Rabies virus-infected Mice Salivary Glands 9 samples shares salivary, glands
- GSE273445 Muscarinic agonism restores degenerated salivary glands through a calcium-ATP metabolic axis [snRNA-Seq] 3 samples shares salivary, glands
- GSE268463 SenMayo transcriptomic senescence panel highlights glial cells in the ageing mouse and human retina 7 samples shares highlights
- GSE95434 Single cell RNA-seq of 346 epithelial cells from the mammary glands of pre-pubescent, pubescent and adult mice 346 samples shares glands
- GSE299704 Meta-analysis of the brain transcriptomes of multiple genetic mouse models of schizophrenia highlights dysregulation in striatum and thalamus 235 samples shares highlights
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.