Human breast milk-derived extracellular vesicles alleviate Alzheimer’s disease phenotypes through delivering CD36
RNA-seq (gene expression) · mouse · 18 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 18 samples: 18 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE327752_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1452678 and SRA study SRP691275. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 18 sample titles: 18 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9664527 Wildtype_PBS_1_PFC
- GSM9664528 Wildtype_PBS_2_PFC
- GSM9664529 Wildtype_PBS_3_PFC
- GSM9664530 5xFAD_PBS_1_PFC
- GSM9664531 5xFAD_PBS_2_PFC
- GSM9664532 5xFAD_PBS_3_PFC
- GSM9664533 5xFAD_HM-EVs_1_PFC
- GSM9664534 5xFAD_HM-EVs_2_PFC
- GSM9664535 5xFAD_HM-EVs_3_PFC
- GSM9664536 Wildtype_PBS_1_HPC
- GSM9664537 Wildtype_PBS_2_HPC
- GSM9664538 Wildtype_PBS_3_HPC
- GSM9664539 5xFAD_PBS_1_HPC
- GSM9664540 5xFAD_PBS_2_HPC
- GSM9664541 5xFAD_PBS_3_HPC
- GSM9664542 5xFAD_HM-EVs_1_HPC
- GSM9664543 5xFAD_HM-EVs_2_HPC
- GSM9664544 5xFAD_HM-EVs_3_HPC
- GSE307127 Immune Receptor Lag3 Deletion Alleviates Neurodegeneration Phenotypes in a Mouse Model of Alzheimer’s Disease 36 samples shares phenotypes, alleviate, alzheimer
- GSE242731 Class switch recombination regulation by extracellular vesicles mediated intercellular epigenomic signaling 48 samples shares extracellular, vesicles
- GSE240538 A bone regenerative strategy based on extracellular vesicles transporting citrate for promoting biomineralization 37 samples shares extracellular, vesicles
- GSE272476 Neutrophils exposed to a cholesterol metabolite secrete extracellular vesicles that promote epithelial-mesenchymal transition and stemness in breast cancer cells [RNA-seq] 30 samples shares extracellular, vesicles
- GSE243611 Human Brain Small Extracellular Vesicles Contain Selectively-Packaged, Full-Length mRNA 18 samples shares extracellular, vesicles
- GSE262426 Insulin resistance alters cortical inhibitory neurons and microglia to exacerbate Alzheimer’s knock-in mouse phenotypes 16 samples shares phenotypes, alzheimer
- GSE333191 Integration of Transcriptional Signatures from Brain Tissue and Plasma Extracellular Vesicles of a Preclinical Tauopathy Mouse Model 16 samples shares extracellular, vesicles
- GSE297762 Mesenchymal Stem Cell Extracellular Vesicles Ameliorate Radiation-caused Dry Mouth 15 samples shares extracellular, vesicles
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.