Transneuronal cytokine delivery promotes functional recovery across spinal cord contusion severities via descending circuit plasticity
RNA-seq (gene expression) · mouse · 9 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 9 samples: 5 × HIL6 vs 4 × GFPGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Transneuronal cytokine delivery promotes functional recovery across spinal cord contusion severities via descending circuit plasticityNeurobiology of disease · 2026
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE327851_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1452888 and SRA study SRP691422. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 9 samples.
How we read this: 2 replicated groups read from 9 sample titles; they account for 9 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9667150 GFP_1 GFP
- GSM9667151 GFP_2 GFP
- GSM9667152 GFP_3 GFP
- GSM9667153 GFP_4 GFP
- GSM9667154 HIL6_1 HIL6
- GSM9667155 HIL6_2 HIL6
- GSM9667156 HIL6_3 HIL6
- GSM9667157 HIL6_4 HIL6
- GSM9667158 HIL6_5 HIL6
- GSE231731 Retinoic acid promotes tissue regeneration by resolving stem cell lineage plasticity 27 samples shares plasticity, promotes
- GSE266900 Cxcr3 promotes protection from colorectal cancer liver metastasis by driving NK infiltration and plasticity 18 samples shares plasticity, promotes
- GSE333169 Transient CB2R Modulation Promotes Luminal-like Differentiation and Restricts Breast Cancer Plasticity 12 samples shares plasticity, promotes
- GSE266472 Transcriptomic Plasticity of the Circadian Clock in Response to Photoperiod: A Study in Male Melatonin-Competent Mice 123 samples shares plasticity
- GSE241761 Molecular and functional profiling of cell diversity and identity in the lateral superior olive, an auditory brainstem center with ascending and descending projections 96 samples shares descending
- GSE236201 Maternal Circadian Rhythms during Pregnancy Dictate Metabolic Plasticity in Offspring 96 samples shares plasticity
- GSE312440 Corticosterone drives behavioral inflexibility via plasticity-related gene expression in the dorsal striatum 71 samples shares plasticity
- GSE270144 Disabling leading and lagging strand histone transmission results in parental histones loss and reduced cell plasticity and viability [RNA-Seq] 60 samples shares plasticity
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.