Ketohexokinase deletion on liver and small intestine transcriptome
RNA-seq (gene expression) · mouse · 32 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 32 samples: 8 conditions, mostly with about 4 replicates eachGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE331146_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1466962 and SRA study SRP700997. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 32 samples.
How we read this: 8 replicated groups read from 32 sample titles; they account for 32 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9739720 Liver-WT-1 Liver-WT
- GSM9739721 Liver-WT-2 Liver-WT
- GSM9739722 Liver-WT-3 Liver-WT
- GSM9739723 Liver-WT-4 Liver-WT
- GSM9739724 Liver-Khk KO-1 Liver-Khk KO
- GSM9739725 Liver-Khk KO-2 Liver-Khk KO
- GSM9739726 Liver-Khk KO-3 Liver-Khk KO
- GSM9739727 Liver-Khk KO-4 Liver-Khk KO
- GSM9739728 Jejunum-WT-1 Jejunum-WT
- GSM9739729 Jejunum-WT-2 Jejunum-WT
- GSM9739730 Jejunum-WT-3 Jejunum-WT
- GSM9739731 Jejunum-WT-4 Jejunum-WT
- GSM9739732 Jejunum-Khk KO-1 Jejunum-Khk KO
- GSM9739733 Jejunum-Khk KO-2 Jejunum-Khk KO
- GSM9739734 Jejunum-Khk KO-3 Jejunum-Khk KO
- GSM9739735 Jejunum-Khk KO-4 Jejunum-Khk KO
- GSM9739736 Ileum-WT-1 Ileum-WT
- GSM9739737 Ileum-WT-2 Ileum-WT
- GSM9739738 Ileum-WT-3 Ileum-WT
- GSM9739739 Ileum-WT-4 Ileum-WT
- GSM9739740 Ileum-Khk KO-1 Ileum-Khk KO
- GSM9739741 Ileum-Khk KO-2 Ileum-Khk KO
- GSM9739742 Ileum-Khk KO-3 Ileum-Khk KO
- GSM9739743 Ileum-Khk KO-4 Ileum-Khk KO
- GSM9739744 Duodenum-WT-1 Duodenum-WT
- GSM9739745 Duodenum-WT-2 Duodenum-WT
- GSM9739746 Duodenum-WT-3 Duodenum-WT
- GSM9739747 Duodenum-WT-4 Duodenum-WT
- GSM9739748 Duodenum-Khk KO-1 Duodenum-Khk KO
- GSM9739749 Duodenum-Khk KO-2 Duodenum-Khk KO
- GSM9739750 Duodenum-Khk KO-3 Duodenum-Khk KO
- GSM9739751 Duodenum-Khk KO-4 Duodenum-Khk KO
- GSE267727 Transcriptome profiling of non-islet metabolic tissues in ~500 DO mouse liver, adipose, heart, and skeletal muscle tissue from mice fed high-fat, high-sugar diet [heart] 482 samples shares liver
- GSE282210 Transcriptome analysis of quiescent livers and regenerating livers after partial hepatectomy (PH) in young and aged mice 133 samples shares liver
- GSE252621 Interactions of Polychlorinated Biphenyls and Their Metabolites with the Brain and Liver Transcriptome of Female Mice 62 samples shares liver
- GSE332646 Bulk RNA-seq of juvenile mouse liver following NDMA or saline treatment in WT and Mgmt-/- genotypes across multiple timepoints 214 samples shares liver
- GSE269328 Glucagon receptor agonism and treatment withdrawal effect on liver transcriptomes of diet-induced obese mice 24 samples shares liver
- GSE244388 PCB126 Modifies the Murine Hepatic Transcriptome and Metallome to Promote Alcohol-associated Liver Disease Pathogenesis 24 samples shares liver
- GSE292884 RNA Sequencing of Liver Samples from UM-HET3 Mice Exposed to Various Compounds from the ITP Study 182 samples shares liver
- GSE319608 Enhanced antisense oligonucleotide delivery reveals that transcript turnover impacts apparent splicing rescue in myotonic dystrophy 98 samples shares liver
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.