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High-throughput transcriptome sequencing of DNAJC2-knockdown clear cell renal cell carcinoma cells(shDNAJC2 vs shCtrl)

GSE335539 Homo sapiens Expression profiling by high throughput sequencing 6 samples Submitted 2026/06/21 Platform GPL24676
Summary
This project was designed to characterize transcriptomic changes caused by DNAJC2 knockdown in clear cell renal cell carcinoma (ccRCC) cells using high-throughput RNA sequencing. Cells transduced with control shRNA and cells with DNAJC2 knockdown were subjected to next-generation transcriptome sequencing to identify differentially expressed genes and pathways regulated by DNAJC2. This dataset was used to investigate the role of DNAJC2 in ccRCC cell metabolism and ferroptosis-related regulation
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Direct links to NCBI, no account and no request form: the whole study as GSE335539_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 6 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1478838 and SRA study SRP709893. Searching any of these in the dataset finder brings you back here.

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