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RNA-seq of THP1 cells with SRSF10 knockdown

GSE336266 Homo sapiens Expression profiling by high throughput sequencing 6 samples Submitted 2026/06/24 Platform GPL24676
Summary
To investigate the downstream transcriptional regulatory network of the RNA-binding protein SRSF10 in acute myeloid leukemia (AML), we performed RNA sequencing (RNA-seq) in THP1 cells following SRSF10 knockdown. THP1 cells were transduced with lentivirus expressing shRNA targeting SRSF10 (shSRSF10) or a non-targeting control shRNA (shNC). Knockdown efficiency was confirmed by RT-qPCR and Western blot prior to RNA extraction. Total RNA was isolated from three biological replicates per condition (shNC and shSRSF10), and cDNA libraries were constructed using the NEBNext Ultra RNA Library Prep Kit. Paired-end 150 bp sequencing was performed on an Illumina platform. Raw reads were processed through quality filtering with fastp and aligned to the human reference genome (hg38) using STAR. Gene-level quantification was performed with featureCounts, and differentially expressed genes were identified using edgeR with thresholds of |log2FC| > 1 and adjusted P < 0.05. This dataset enables the identification of SRSF10-regulated genes and provides insights into the role of SRSF10 in AML cell survival.
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Direct links to NCBI, no account and no request form: the whole study as GSE336266_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 6 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1481196 and SRA study SRP711882. Searching any of these in the dataset finder brings you back here.

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