Remote ischemic conditioning mitigates diesel exhaust-induced pulmonary fibrosis by alleviating pulmonary inflammation and fibrogenesis
RNA-seq (gene expression) · mouse · 24 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 24 samples: 8 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE337095_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1484043 and SRA study SRP713891. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 24 samples.
How we read this: 8 replicated groups read from 24 sample titles; they account for 24 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9848144 Control1 Control
- GSM9848145 Control2 Control
- GSM9848146 Control3 Control
- GSM9848147 RIC1 RIC
- GSM9848148 RIC2 RIC
- GSM9848149 RIC3 RIC
- GSM9848150 DE1 DE
- GSM9848151 DE2 DE
- GSM9848152 DE3 DE
- GSM9848153 DE+PFD1 DE+PFD
- GSM9848154 DE+PFD2 DE+PFD
- GSM9848155 DE+PFD3 DE+PFD
- GSM9848156 RIC+DE1 RIC+DE
- GSM9848157 RIC+DE2 RIC+DE
- GSM9848158 RIC+DE3 RIC+DE
- GSM9848159 DE+RIC1 DE+RIC
- GSM9848160 DE+RIC2 DE+RIC
- GSM9848161 DE+RIC3 DE+RIC
- GSM9848162 RIC+DE+PFD1 RIC+DE+PFD
- GSM9848163 RIC+DE+PFD2 RIC+DE+PFD
- GSM9848164 RIC+DE+PFD3 RIC+DE+PFD
- GSM9848165 DE+PFD+RIC1 DE+PFD+RIC
- GSM9848166 DE+PFD+RIC2 DE+PFD+RIC
- GSM9848167 DE+PFD+RIC3 DE+PFD+RIC
- GSE255524 Remote limb ischemic conditioning alleviates nonalcoholic steatohepatitis via extracellular vesicle-mediated muscle-liver crosstalk [RIC Sham] 19 samples shares conditioning, ischemic
- GSE255526 Remote limb ischemic conditioning alleviates nonalcoholic steatohepatitis via extracellular vesicle-mediated muscle-liver crosstalk [miR_181_RNAseq] 10 samples shares conditioning, ischemic
- GSE255527 Remote limb ischemic conditioning alleviates nonalcoholic steatohepatitis via extracellular vesicle-mediated muscle-liver crosstalk [hEV_RNAseq] 8 samples shares conditioning, ischemic
- GSE255528 Remote limb ischemic conditioning alleviates nonalcoholic steatohepatitis via extracellular vesicle-mediated muscle-liver crosstalk 45 samples shares conditioning, ischemic
- GSE269129 Alcohol and fear conditioning produce strain-specific changes in the dorsal hippocampal transcriptome of adolescent C57BL/6J and DBA/2J mice 63 samples shares conditioning
- GSE243140 Spatial transcriptomics reveals modulation of transcriptional networks across brain regions after auditory threat conditioning 16 samples shares conditioning
- GSE303498 Leptin as a Key Driver for Organ Fibrogenesis 15 samples shares fibrogenesis
- GSE334847 Hypoxic preconditioning attenuates renal ischemia–reperfusion injury by suppressing the IL-17A/IL-17RA/TRAF6 inflammatory axis 12 samples shares conditioning
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.