← BioTransfer GEO Dataset Finder
GEO series

Single-cell transcriptomic validation of B cell, T cell, and myeloid subsets in colon from C57BL/6 mice

GSE341912 Mus musculus Expression profiling by high throughput sequencing 3 samples Submitted 2026/08/04 Platform GPL28330
Summary
This dataset serves as a validation cohort for single-cell transcriptomic changes observed in germ-free (GF) and specific pathogen-free (SPF) mice. Single-cell RNA sequencing was performed on B cell, T cell, and myeloid subsets isolated from the colon of C57BL/6 mice. The dataset captures immune heterogeneity in the absence of microbiota and enables direct comparison with the KM mouse cohort.
This dataset
Download

Direct links to NCBI, no account and no request form: the whole study as GSE341912_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 3 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1504616. Searching any of these in the dataset finder brings you back here.

Samples in this study

The sample list for this study is not cached yet. Press Sort into groups and it will be fetched from NCBI.

+ 3 more — browse all 3 samples with per-sample file links →

Similar datasets

Search all mouse RNA-seq datasets in GEO →

Share this dataset

Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.