PCGF Homologs and RYBP Define Functionally Distinct PRC1 Family Complexes
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 15 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 15 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE34774_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA150339 and SRA study SRP010052. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 15 more — browse all 15 samples with per-sample file links →
- GSE315997 Destabilization of the noncanonical PRC1.1 complex via USP7 inhibition induces neuronal differentiation in neuroblastoma [CHIP-Seq, CUT&RUN, PCGF1KO] 10 samples shares pcgf, prc1
- GSE246931 Specific cPRC1 complexes are co-opted to mediate oncogenic gene repression in diffuse midline glioma 164 samples shares prc1, complexes
- GSE291441 variant Polycomb Repressive complexes 1 (vPRC1s) in synovial sarcoma 16 samples shares prc1, complexes
- GSE280900 BRD4-mediated ER membrane contact creates functionally distinct mitochondrial subtypes 2 samples shares functionally, distinct
- GSE69017 caArray_gray-00215: A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes 51 samples shares functionally, distinct
- GSE27824 Reprogramming Transcriptional Responses through Functionally-Distinct Classes of Enhancers in Prostate Cancer Cells 42 samples shares functionally, distinct
- GSE330178 Phenotypically similar but functionally distinct NK cell populations within the human maternal-fetal interface 35 samples shares functionally, distinct
- GSE27823 Reprogramming Transcriptional Responses through Functionally-Distinct Classes of Enhancers in Prostate Cancer Cells [ChIP-Seq, Gro-Seq] 30 samples shares functionally, distinct
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.