Gene expression analysis of rectal mucosa in chronic irritable bowel syndrome (IBS) compared to healthy volunteers (HV)
Expression microarray · human · 221 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Samples
- 221 samples: 221 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE36701_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA153623. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 221 sample titles: 221 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM899034 Rectal Colon Biopsy_SD52930_HV [GP602R_9_62_SS102990]
- GSM899035 Rectal Colon Biopsy_SD52930_HV [GP602R_10_59_SS102991]
- GSM899036 Rectal Colon Biopsy_SD52931_HV [GP602R_11_99_SS102992]
- GSM899037 Rectal Colon Biopsy_SD52931_HV [GP602R_12_102_SS102993]
- GSM899038 Rectal Colon Biopsy_SD52932_HV [GP602R_13_9_SS102994]
- GSM899039 Rectal Colon Biopsy_SD52933_HV [GP602R_15_51_SS102996]
- GSM899040 Rectal Colon Biopsy_SD52933_HV [GP602R_16_69_SS102997]
- GSM899041 Rectal Colon Biopsy_SD52934_HV [GP602R_17_32_SS102998]
- GSM899042 Rectal Colon Biopsy_SD52934_HV [GP602R_18_30_SS102999]
- GSM899043 Rectal Colon Biopsy_SD52935_HV [GP602R_19_130_SS103000]
- GSM899044 Rectal Colon Biopsy_SD52935_HV [GP602R_20_126_SS103001]
- GSM899045 Rectal Colon Biopsy_SD52936_HV [GP602R_21_84_SS103002]
- GSM899046 Rectal Colon Biopsy_SD52936_HV [GP602R_22_77_SS103003]
- GSM899047 Rectal Colon Biopsy_SD52937_HV [GP602R_23_138_SS103004]
- GSM899048 Rectal Colon Biopsy_SD52937_HV [GP602R_24_139_SS103005]
- GSM899049 Rectal Colon Biopsy_SD52938_HV [GP602R_25_71_SS103006]
- GSM899050 Rectal Colon Biopsy_SD52938_HV [GP602R_26_73_SS103007]
- GSM899051 Rectal Colon Biopsy_SD52939_HV [GP602R_27_37_SS103008]
- GSM899052 Rectal Colon Biopsy_SD52939_HV [GP602R_28_33_SS103009]
- GSM899053 Rectal Colon Biopsy_SD52940_HV [GP602R_29_104_SS103010]
- GSM899054 Rectal Colon Biopsy_SD52940_HV [GP602R_30_103_SS103011]
- GSM899055 Rectal Colon Biopsy_SD52941_HV [GP602R_31_140_SS103012]
- GSM899056 Rectal Colon Biopsy_SD52941_HV [GP602R_32_124_SS103013]
- GSM899057 Rectal Colon Biopsy_SD52942_HV [GP602R_33_13_SS103014]
- GSM899058 Rectal Colon Biopsy_SD52942_HV [GP602R_34_4_SS103015]
- GSM899059 Rectal Colon Biopsy_SD52943_HV [GP602R_35_105_SS103016]
- GSM899060 Rectal Colon Biopsy_SD52943_HV [GP602R_36_117_SS103017]
- GSM899061 Rectal Colon Biopsy_SD52944_HV [GP602R_38_55_SS103019]
- GSM899062 Rectal Colon Biopsy_SD52945_HV [GP602R_39_113_SS103020]
- GSM899063 Rectal Colon Biopsy_SD52945_HV [GP602R_40_118_SS103021]
- GSM899064 Rectal Colon Biopsy_SD52946_HV [GP602R_41_56_SS103022]
- GSM899065 Rectal Colon Biopsy_SD52946_HV [GP602R_42_63_SS103023]
- GSM899066 Rectal Colon Biopsy_SD52947_HV [GP602R_43_5_SS103024]
- GSM899067 Rectal Colon Biopsy_SD52947_HV [GP602R_44_6_SS103025]
- GSM899068 Rectal Colon Biopsy_SD52948_HV [GP602R_45_46_SS103026]
- GSM899069 Rectal Colon Biopsy_SD52948_HV [GP602R_46_43_SS103027]
- GSM899070 Rectal Colon Biopsy_SD52949_HV [GP602R_47_128_SS103028]
- GSM899071 Rectal Colon Biopsy_SD52949_HV [GP602R_48_122_SS103029]
- GSM899072 Rectal Colon Biopsy_SD52950_HV [GP602R_49_75_SS103030]
- GSM899073 Rectal Colon Biopsy_SD52950_HV [GP602R_50_82_SS103031]
+ 181 more — browse all 221 samples with per-sample file links →
- GSE14841 Expression data from healthy volunteers and IBS patients 9 samples shares ibs, volunteers, healthy
- GSE212719 Expression of mRNA in intestinal tissue samples from IBS-D patients and healthy subjects 10 samples shares ibs, healthy
- GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls 192 samples shares compared, healthy
- GSE60601 Gene expression data from CD14++ CD16- classical monocytes from healthy volunteers and patients with pancreatic ductal adenocarcinoma 12 samples shares volunteers, healthy
- GSE118829 Gene expressions of T cells in each developmental stages in healthy volunteers and patients with rheumatoid arthritis 336 samples shares volunteers, healthy
- GSE150910 RNA-Sequencing of Chronic hypersensitivity pneumonitis compared with Idiopathic Pulmonary Fibrosis and Control Lung 288 samples shares compared, chronic
- GSE123658 Transimmunom whole blood RNA-seq data from type 1 diabetic patients and healthy volunteers 82 samples shares volunteers, healthy
- GSE250499 The proteomic and transcriptomic profiles of gastric mucosa from health volunteers 68 samples shares volunteers, mucosa
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.