GEO series

Epigenome analysis of placenta samples from newborns

GSE36829 Homo sapiens (human) DNA methylation 48 samples Submitted 2012/03/29 Platform GPL8490

At a glance

DNA methylation · human · 48 samples

What it is: DNA methylationChemical marks on DNA that help switch genes on or off.
Organism: Homo sapiens (human)
Samples: 48 samples
Data you can get: A processed expression table (series matrix) and the array files, from NCBI.

Summary (written by the submitters)

Genome wide DNA methylation profiling of placenta samples from 48 newborns. The Illumina Infinium 27k Human DNA methylation Beadchip v1.2 was used to obtain DNA methylation profiles across approximately 27,000 CpGs.

This dataset

Open GSE36829 in finder → Find more human methylation datasets →

Download · which file do I need?

Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.

1 · Just have a look

Processed table

The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.

Series matrix ↓

2 · Re-analyse it

Supplementary files

The count tables and other files the authors uploaded. Take only the samples you need.

All supplementary files ↗

3 · The original raw files

Whole study · RAW.tar

Everything the authors deposited as one archive (GSE36829_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.

Whole study · RAW.tar ↓

What the files usually look like: Look for beta-value tables or raw IDAT files among the supplementary files.

Also filed as BioProject PRJNA157193. Searching any of these in the dataset finder brings you back here.

NCBI GEO page ↗

Samples in this study

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+ 48 more — browse all 48 samples with per-sample file links →

Datasets on a similar topic

GSE58045 Epigenome-Wide Scans Identify Differentially Methylated Regions for Age and Age-Related Phenotypes in a Healthy Ageing Population 172 samples shares epigenome
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GSE325907 Placental gene co-expression networks and mediation analysis identifies pathways and genes associated with birthweight 319 samples shares placenta
GSE260892 Gene expression and Epigenome analysis of hESCs undergoing neuronal differentiation 194 samples shares epigenome
GSE149407 Single-Cell Multi-Omics Sequencing Reveals the Dynamic Epigenome Landscape of Human Adult Spermatogenesis 1435 samples shares epigenome
GSE316497 Genotype-Epigenome-Phenotype Integration Reveals the Contributions of Peripheral Immune Cells to Bipolar Disorder Pathogenesis, Phenotypic Heterogeneity, and Therapy 1012 samples shares epigenome
GSE318446 Multi-omics analysis of human placentas from first year of the COVID-19 pandemic reveals sex-dependant effects 66 samples shares placenta
GSE306864 Placental transcriptome profiles in late-onset preeclampsia: a cross-sectional observational analysis stratified by fetal sex 58 samples shares placenta

Search all human methylation datasets in GEO →

Share this dataset

Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.