m6A mapping in human RNA (with treatments)
RNA-seq (gene expression) · human · 8 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 8 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE37002_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA158109 and SRA study SRP012098. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 8 more — browse all 8 samples with per-sample file links →
- GSE164055 Mapping origins of variation in neural trajectories of human pluripotent stem cells 101 samples shares mapping
- GSE98011 Mapping the human DC lineage through the integration of high dimensional techniques 93 samples shares mapping
- GSE246269 Gene perturbation in human arterial smooth muscle cells under treatments promoting synthetic or contractile phenotype 55 samples shares treatments
- GSE264260 Mapping of mitogen and metabolic sensitivity in organoids defines requirements for human hepatocyte growth [bulk RNA-seq] 38 samples shares mapping
- GSE295225 Transcriptomic changes in human SCC-25 Parental and RARG knockout cells in response to 6h and 48h treatments with RARγ agonists CD1530 or all-trans retinoic acid (RA). 36 samples shares treatments
- GSE161195 Single cell RNA-seq of relapsed and refractory multiple myeloma patients defines new resistance pathways and targeted treatments 213 samples shares treatments
- GSE289073 Single-cell mapping of human endometrium and decidua reveals epithelial and stromal contributions to fertility [bulk RNA-seq] 26 samples shares mapping
- GSE164053 Mapping origins of variation in neural trajectories of human pluripotent stem cells [SOX21 KO RNA-seq] 18 samples shares mapping
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.