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Compare gene expression profiles of mouse iNSC, WT-NSC, and MEF

GSE37859 Mus musculus Expression profiling by array 12 samples Submitted 2012/06/07 Platform GPL6246
Summary
The iNSC cells are two clones generated from the same MEF line. Therefore, we conducted one analysis that compared the two clonal lines and a separate analysis that compared iNSC vs. NSC, iNSC vs. MEF, and NSC vs. MEF. Both were single factor ANOVAs, the first compared two groups (the iNSC lines) and the second had three groups. For the second analysis, we then used linear contrasts to extract the information about differences between all pairs (e.g. iNSC vs. NSC). Looking at the iNSC lines, the correlations between samples from different clonal lines are as high as the correlations between samples from within a clonal line. Given this, we think that the analysis that combines all 6 of them to compare against the other cell types is appropriate.
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Direct links to NCBI, no account and no request form: the whole study as GSE37859_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 12 samples.

Also filed as BioProject PRJNA164693. Searching any of these in the dataset finder brings you back here.

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