Gene expression profile in Caco-2 cells infected with Japanese encephalitis virus
Expression microarray · human · 6 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Samples
- 6 samples
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE39740_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA171567. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 6 more — browse all 6 samples with per-sample file links →
- GSE243400 Gene expression profile at single cell level of human Caco2 (hCaco2) cells expressing mouse CD300lf (mCD300lf) infected with murine norovirus (MNV) 12 samples shares infected, virus
- GSE311056 Transcriptional consequences of herpes simplex virus 1 ICP4 inducible expression in uninfected cells 22 samples shares infected, virus
- GSE289829 Differentiation-induced reduction in functional diversity restricts the ability of cytomegalovirus-specific CD8 T cells to eliminate virus-infected cells 31 samples shares infected, virus
- GSE297386 Vitamin D Enhances Antiviral Responses in Dengue Virus-Infected Macrophages by Modulating Early-Response Gene Expression 24 samples shares infected, virus
- GSE288390 Transcriptomic investigation of differential cellular reprogramming of infected cells by human adenovirus 5 E1A mutants 10 samples shares infected, virus
- GSE288786 Human papillomavirus (HPV) infected epithelial cells and FBLN1+ fibroreticular cells govern the immunogenic tumor microenvironment in HPV-associated oropharyngeal squamous cell carcinoma 10 samples shares infected, virus
- GSE317492 A tonsil organoid model reveals Epstein-Barr virus infected germinal center B cell states during primary infection 26 samples shares infected, virus
- GSE284674 Comparative analysis of the cell transcriptome of primary B lymphocytes infected with the Epstein-Barr virus (EBV), its EBNA2 or EBNALP KO derivatives, or activated by CD40L and IL4 at 48 hours post-infection or treatment. 25 samples shares infected, virus
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.