Transcription profiling of human skin squamous cell carcinoma (SCC)
Expression microarray · human · 13 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Topic
- Cutaneous squamous cell carcinomaThis series is part of our curated briefing on it.
- Samples
- 13 samples
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE45164_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA193097. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 13 more — browse all 13 samples with per-sample file links →
- GSE300270 Loss of WWOX Drives Cutaneous Squamous Cell Carcinoma (cSCC) through Regulating EMT 24 samples same disease briefing · shares scc, squamous
- GSE209993 A BNC1-IRF6-AP1 transcriptional network in keratinocytes and Squamous Cell Carcinoma [ChIP-Seq] 8 samples same disease briefing · shares transcription, squamous
- GSE45216 Key differences identified between actinic keratosis and cutaneous squamous cell carcinoma by transcriptome profiling 40 samples same disease briefing · shares squamous
- GSE98780 The genomic landscape of cutaneous squamous cell carcinoma 108 samples same disease briefing · shares squamous
- GSE117247 Ruxolitinib inhibits Cyclosporine-induced proliferation of cutaneous squamous cell carcinoma 23 samples same disease briefing · shares squamous
- GSE266912 RNA sequencing of 15 patient derived cSCC cell lines 15 samples same disease briefing · shares scc
- GSE319968 Spatial and Bulk Transcriptomic Profiling Defines the Molecular Evolution of Cutaneous Squamous Cell Carcinoma and Reveals Stage-Specific Biomarkers of Clinical Relevance [GeoMx] 105 samples same disease briefing · shares squamous
- GSE319969 Spatial and Bulk Transcriptomic Profiling Defines the Molecular Evolution of Cutaneous Squamous Cell Carcinoma and Reveals Stage-Specific Biomarkers of Clinical Relevance [RNA-Seq] 24 samples same disease briefing · shares squamous
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.