The Obesity-associated Fto gene regulates activity of the dopaminergic midbrain circuitry [FTO KO]
DNA methylation · mouse · 6 samples
- What it is
- DNA methylationChemical marks on DNA that help switch genes on or off.
- Organism
- Mus musculus (mouse)
- Samples
- 6 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE47216_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for beta-value tables or raw IDAT files among the supplementary files.
Also filed as BioProject PRJNA205150 and SRA study SRP023107. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 6 more — browse all 6 samples with per-sample file links →
- GSE47217 The Obesity-associated Fto gene regulates activity of the dopaminergic midbrain circuitry 12 samples shares fto, obesity-associated, dopaminergic, circuitry, activity, midbrain
- GSE47215 The Obesity-associated Fto gene regulates activity of the dopaminergic midbrain circuitry [WT] 6 samples shares fto, obesity-associated, dopaminergic, circuitry, activity, midbrain
- GSE304247 FTO-Mediated m6A Demethylation Regulates PGC-1α-Dependent Mitochondrial Biogenesis to Attenuate Aluminum-Induced Neuronal Senescence [RNA-Seq] 6 samples shares fto
- GSE53244 m6a peak analysis in normal, FTO deficient and five stages of adipogenesis (D-2/0/2/5/10) in Mouse embryo fibroblast 3T3-L1 pre-adipocytes 18 samples shares fto
- GSE53249 Transcriptomics analysis of gene expression in normal and FTO, METTL3 deficient Mouse embryo fibroblast 3T3-L1 pre-adipocytes 6 samples shares fto
- GSE297679 Elevated FTO alleviates sepsis-induced acute kidney injury by regulating macrophage inflammatory phenotypes [MeRIP-seq] 12 samples shares fto
- GSE270717 The m6A demethylase FTO controls activation-induced cell death in effector CD8+ T cells by modulating Fas expression 10 samples shares fto
- GSE297677 Elevated FTO alleviates sepsis-induced acute kidney injury by regulating macrophage inflammatory phenotypes [RNA-Seq] 9 samples shares fto
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.