Differentiation of human and murine induced pluripotent stem cells to microglia-like cells [mouse]
Expression microarray · mouse · 24 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Mus musculus (mouse)
- Samples
- 24 samples: 8 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Read the full summary ↓
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE47605_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA206513. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 24 samples.
How we read this: 8 replicated groups read from 24 sample titles; they account for 24 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM1153099 iPSC Replicate 1 iPSC
- GSM1153100 iPSC Replicate 2 iPSC
- GSM1153101 iPSC Replicate 3 iPSC
- GSM1153102 iPS-MG Replicate 1 iPS-MG
- GSM1153103 iPS-MG Replicate 2 iPS-MG
- GSM1153104 iPS-MG Replicate 3 iPS-MG
- GSM1153105 nMG Replicate 1 nMG
- GSM1153106 nMG Replicate 2 nMG
- GSM1153107 nMG Replicate 3 nMG
- GSM1153108 aMG Replicate 1 aMG
- GSM1153109 aMG Replicate 2 aMG
- GSM1153110 aMG Replicate 3 aMG
- GSM1153111 DC Replicate 1 DC
- GSM1153112 DC Replicate 2 DC
- GSM1153113 DC Replicate 3 DC
- GSM1153114 NSC Replicate 1 NSC
- GSM1153115 NSC Replicate 2 NSC
- GSM1153116 NSC Replicate 3 NSC
- GSM1153117 BMM Replicate 1 BMM
- GSM1153118 BMM Replicate 2 BMM
- GSM1153119 BMM Replicate 3 BMM
- GSM1153120 PM Replicate 1 PM
- GSM1153121 PM Replicate 2 PM
- GSM1153122 PM Replicate 3 PM
- GSE292289 H3K79 methylation and H3K36 trimethylation synergistically regulate gene expression in pluripotent stem cells 94 samples shares pluripotent, stem
- GSE292862 Modelling mouse embryogenesis from chemically induced totipotent stem cells 22 samples shares induced, stem
- GSE309993 Effector differentiation by stem-like intraepithelial γδ T cells is required for host defense against infection 25 samples shares stem
- GSE318069 eIF4G2-mediated Translation Initiation of Histone Modifiers is Essential for Intestinal Stem Cell Maintenance and Differentiation 145 samples shares stem
- GSE279796 Setdb1 regulates proper differentiation of adult intestinal stem cells via restraining permissive chromatin structure and transcriptional variability 18 samples shares stem
- GSE302124 Plasmacytoid dendritic cells are dispensable or detrimental in murine systemic or respiratory viral infections [RNA-Seq 1] 18 samples shares stem
- GSE271800 Diploid embryo complementation of embryonic stem cells efficiently generates a homozygous Gjb2 mutant deaf mouse model 131 samples shares stem
- GSE327391 In vivo systematic detection of the outcomes of CRISPR/Cas9 mediated DNA repair in skeletal muscle stem cells [control] 81 samples shares stem
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.