Global epigenomic reconfiguration during mammalian brain development
DNA methylation · human · 65 samples
- What it is
- DNA methylationChemical marks on DNA that help switch genes on or off.
- Organism
- Homo sapiens (human)
- Samples
- 65 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE47966_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for beta-value tables or raw IDAT files among the supplementary files.
Also filed as BioProject PRJNA208503 and SRA study SRP026048. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 65 more — browse all 65 samples with per-sample file links →
- GSE65926 Circular RNAs in the mammalian brain are highly abundant, conserved, and dynamically expressed 25 samples shares mammalian, brain
- GSE97179 Single Cell Methylome Signatures Reveal Distinct Neuronal Populations and Regulatory Elements in the Mammalian Cortex 6172 samples shares mammalian
- GSE132266 scChIC-seq reveals focusing of global chromatin domains during differentiation 80 samples shares global
- GSE185619 2cChIP-seq: an efficient and reliable method for epigenomic profiling of small cell numbers and single cells 231 samples shares epigenomic
- GSE282636 Multiplex generation and single cell analysis of structural variants in mammalian genomes 197 samples shares mammalian
- GSE288933 Pervasive and programmed nucleosome distortion patterns on single mammalian chromatin fibers 162 samples shares mammalian
- GSE61073 mRNA destabilization is the dominant effect of mammalian microRNAs by the time substantial repression ensues 95 samples shares mammalian
- GSE60426 mRNA destabilization is the dominant effect of mammalian microRNAs by the time substantial repression ensues (sequencing) 85 samples shares mammalian
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.