Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data

Direct links to NCBI, no account and no request form: the whole study as GSE49712_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 10 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA214799 and SRA study SRP028705. Searching any of these in the dataset finder brings you back here.

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• GSE316832 Comprehensive single-cell transcriptomic profiling of the scalp from patients with moderate-to-severe alopecia areata 30 samples
• GSE199939 Comprehensive transcriptomic analysis of immune-related genes in diabetic foot ulcers: New insights into mechanisms and therapeutic targets 21 samples
• GSE314342 Genome-scale perturb-seq in primary human CD4+ T cells reveals genes regulating T cell programs and human immune traits. 577 samples
• GSE205672 Transcriptomes of human PBMCs and monocytes in sepsis patients 460 samples
• GSE319641 RNA-Seq profiling of pre- and on-treatment tumor samples from breast cancer patients enrolled in the NeoTRIP trial. 401 samples
• GSE309595 Longitudinal Analysis of Multiple Myeloma: Therapeutic Response and Immune Microenvironment Dynamics in the Context of Tumor Heterogeneity [scRNA-seq] 270 samples
• GSE243013 A single-cell atlas of immune heterogeneity in anti-PD1-treated non-small cell lung cancer 243 samples
• GSE263733 Single-cell transcriptome analysis reveals subtype-specific clonal evolution and microenvironmental changes in liver metastasis of pancreatic adenocarcinoma and their clinical implications 218 samples

Search all human RNA-seq datasets in GEO →