Global variation of copy number in the human genome_EA
human · 612 samples
- Organism
- Homo sapiens (human)
- Samples
- 612 samples: 612 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE5013_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
Also filed as BioProject PRJNA95797. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from the first 400 of 612 sample titles: 400 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM112392 NA06985_Nsp_EA
- GSM112393 NA06991_Nsp_EA
- GSM112394 NA06993_Nsp_EA
- GSM112395 NA06994_Nsp_EA
- GSM112396 NA07000_Nsp_EA
- GSM112397 NA07019_Nsp_EA
- GSM112398 NA07022_Nsp_EA
- GSM112399 NA07029_Nsp_EA
- GSM112400 NA07034_Nsp_EA
- GSM112401 NA07048_Nsp_EA
- GSM112402 NA07055_Nsp_EA
- GSM112403 NA07056_Nsp_EA
- GSM112404 NA07345_Nsp_EA
- GSM112492 NA07348_Nsp_EA
- GSM112493 NA07357_Nsp_EA
- GSM112494 NA10830_Nsp_EA
- GSM112495 NA10831_Nsp_EA
- GSM112496 NA10835_Nsp_EA
- GSM112497 NA10838_Nsp_EA
- GSM112498 NA10839_Nsp_EA
- GSM112499 NA10846_Nsp_EA
- GSM112500 NA10847_Nsp_EA
- GSM112501 NA10851_Nsp_EA
- GSM112502 NA10854_Nsp_EA
- GSM112503 NA10855_Nsp_EA
- GSM112504 NA10856_Nsp_EA
- GSM112505 NA10857_Nsp_EA
- GSM112506 NA10859_Nsp_EA
- GSM112507 NA10860_Nsp_EA
- GSM112508 NA10861_Nsp_EA
- GSM112509 NA10863_Nsp_EA
- GSM112510 NA11829_Nsp_EA
- GSM112511 NA11830_Nsp_EA
- GSM112512 NA11831_Nsp_EA
- GSM112513 NA11832_Nsp_EA
- GSM112514 NA11839_Nsp_EA
- GSM112515 NA11840_Nsp_EA
- GSM112516 NA11881_Nsp_EA
- GSM112517 NA11882_Nsp_EA
- GSM112518 NA11992_Nsp_EA
+ 572 more — browse all 612 samples with per-sample file links →
- GSE9845 Copy number alterations of 103 hepatocellular carcinomas with hepatitis C virus etiology 197 samples shares number, copy
- GSE37385 Subgroup specific somatic copy number aberrations in the medulloblastoma genome 1382 samples shares number, copy
- GSE308298 Mapping functional non-coding variation in individual human genomes through haplotyping, multiomics, and deep learning 33 samples shares variation
- GSE252006 Global impact of unproductive splicing on human gene expression. 179 samples shares global
- GSE272560 A measles virus collective infectious unit that caused lethal human brain disease includes many locally restricted and few widespread copy-back defective genomes 16 samples shares copy
- GSE164055 Mapping origins of variation in neural trajectories of human pluripotent stem cells 101 samples shares variation
- GSE254174 Changes to the global transcriptome in human U2OS and BJ cell lines as a result of STING activation 48 samples shares global
- GSE47729 Global peripheral blood gene expression study 350 samples shares global
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.