Derivation of novel human ground state naïve pluripotent stem cells.
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 71 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 71 samples
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE52824_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA230244 and SRA study SRP033238. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 71 more — browse all 71 samples with per-sample file links →
- GSE52617 Derivation of novel human ground state naïve pluripotent stem cells [ChIP-seq; RRBS-seq] 59 samples shares pluripotent, derivation, ground, state, stem
- GSE89301 Genome-wide analysis of chromatin state in extended pluripotent stem cells, primed pluripotent stem cells, and naïve pluripotent stem cells 10 samples shares pluripotent, state, stem
- GSE78116 Differentiation of human and murine induced pluripotent stem cells to microglia-like cells 45 samples shares pluripotent, stem
- GSE252590 Generation of mature epicardium derived from human-induced pluripotent stem cells via inhibition of mTOR signaling 23 samples shares pluripotent, stem
- GSE298432 Establishment of Human Formative Pluripotent Stem Cell Like Cells Exhibiting Amniotic Differentiation Potentials 21 samples shares pluripotent, stem
- GSE224475 ETMR stem-like state and chemo-resistance are supported by perivascular cells at single-cell resolution (human+murine organoids subset) 21 samples shares state, stem
- GSE298429 Establishment of Human Formative Pluripotent Stem Cell Like Cells Exhibiting Amniotic Differentiation Potentials [bulk RNA-seq] 13 samples shares pluripotent, stem
- GSE80732 Global transcriptional analysis of human extended pluripotent stem cells, human primed pluripotent stem cells, mouse extended pluripotent stem cells, and mouse embryonic stem cells by RNA-seq 10 samples shares pluripotent, stem
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.