Gene expression profiles in vitiligo lesional skin
Expression microarray · human · 16 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Samples
- 16 samples: 5 × Control patient vs 5 × Vitiligo patient vs 3 × Control mouse vs 3 × Vitiligo mouseGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE53148_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA231153. Searching any of these in the dataset finder brings you back here.
Supports a case/control comparison: 5 samples read as cases, 3 as controls.
How we read this: 4 replicated groups read from 16 sample titles; they account for 16 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM1283004 Control patient 1 Control patient
- GSM1283005 Control patient 2 Control patient
- GSM1283006 Control patient 3 Control patient
- GSM1283007 Control patient 4 Control patient
- GSM1283008 Control patient 5 Control patient
- GSM1283009 Vitiligo patient 1 Vitiligo patient
- GSM1283010 Vitiligo patient 2 Vitiligo patient
- GSM1283011 Vitiligo patient 3 Vitiligo patient
- GSM1283012 Vitiligo patient 4 Vitiligo patient
- GSM1283013 Vitiligo patient 5 Vitiligo patient
- GSM1283014 Control mouse 1 Control mouse
- GSM1283015 Control mouse 2 Control mouse
- GSM1283016 Control mouse 3 Control mouse
- GSM1283017 Vitiligo mouse 1 Vitiligo mouse
- GSM1283018 Vitiligo mouse 2 Vitiligo mouse
- GSM1283019 Vitiligo mouse 3 Vitiligo mouse
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- GSE35459 Transcriptome profiles of mouse and human monocyte and dendritic cell subsets 64 samples shares profiles
- GSE254616 The effect of TRAF6 loss on the gene expression profiles in leukemia cells 32 samples shares profiles
- GSE150672 Highly Efficient, Massively-Parallel Single-Cell RNA-Seq Reveals Cellular States and Molecular Features of Human Skin Pathology 438 samples shares skin
- GSE216612 Gene expression profiles of hematopoietic stem/progenitor cells after stimulating CCL2. 2 samples shares profiles
- GSE204765 Multi-modal skin atlas associates a multicellular immune-stromal community with altered cornification and T cell expansion in atopic dermatitis. 46 samples shares skin
- GSE204762 Multi-modal skin atlas associates a multicellular immune-stromal community with altered cornification and T cell expansion in atopic dermatitis [scRNA-seq] 43 samples shares skin
- GSE311920 Fibroblasts resist Staphylococcus aureus on the skin surface by responding to interleukin-1 and recruiting neutrophils 16 samples shares skin
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.