RNA-RNA interactions enable specific targeting of noncoding RNAs to nascent pre-mRNAs and chromatin sites

Direct links to NCBI, no account and no request form: the whole study as GSE55914_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 46 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA241313 and SRA study SRP040132. Searching any of these in the dataset finder brings you back here.

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+ 46 more — browse all 46 samples with per-sample file links →

• GSE72720 CTCF binding polarity determines chromatin looping 506 samples
• GSE271760 Structural perturbation of chromatin domains with multiple developmental regulators can severely impact gene regulation and development 88 samples
• GSE297541 Nascent transcript sequencing visualizes mouse preimplantation embryonic genome activation 61 samples
• GSE296587 Sequencing DNA methylation and hydroxymethylation at co-occurring chromatin features 31 samples
• GSE300288 Single-cell and spatial transcriptomics analysis of tobacco-associated lung adenocarcinoma development, and in response to targeting inflammation alone or in combination with immune checkpoint blockade in precancerous phase [scRNA-seq] 31 samples
• GSE244681 CTCF-mediated 3D chromatin predetermines the gene expression program in the male germline 26 samples
• GSE283392 Distinct use of super-enhancer elements controls cell type-specific CD25 transcription and function 25 samples
• GSE337190 CAR-NKT cells induce low cytokine release syndrome by targeting hyperinflammatory macrophages with mitigation from GM-SCF inhibition. 24 samples

Search all mouse ChIP / ATAC / CUT&Tag datasets in GEO →